CX306023

Overview
NameCX306023
Unique NameCX306023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 7.603e-44
Identity = 88/165 (53.33%), Postives = 103/165 (62.42%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGVASSDYCDPN--YPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  G A  DYC  +  +PC    K YGRGPIQLS+N+NY               +PDL+A+D  +SF +A W WMT Q PKPSCH V   +W P A+D
Sbjct:  102 CPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY--GPAGQAIGADLLGDPDLVASDATVSFDTAFWFWMTPQSPKPSCHAVATGQWTPSADD 264          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 6.436e-43
Identity = 83/154 (53.90%), Postives = 103/154 (66.88%), Query Frame = 3
Query:   18 FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+  +     DP Y      YGRGPIQL+  YNY              NNPDL+++DPV++F++AIW WMTAQ PKPSCH+VI ++W P  +D
Sbjct:   52 FYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS-----DPPY------YGRGPIQLTHKYNYQ--LAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMTAQSPKPSCHDVITNQWTPSGDD 192          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 1.753e-40
Identity = 83/159 (52.20%), Postives = 100/159 (62.89%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF R++     D  D       + YGRGPIQL+   NY R            NNPDL+ATDP++SF++AIW WMTAQ  KPSCH VII +W P   D
Sbjct:   48 CPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGG----SAGTFTGGYCFVRQI-----DQSD-------RYYGRGPIQLTHQSNYERAGQGIGVGQDLVNNPDLVATDPIISFRTAIWFWMTAQDNKPSCHNVIIGQWTPSPAD 190          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 3.905e-40
Identity = 82/159 (51.57%), Postives = 99/159 (62.26%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HET GG      G +  GYCF +++    SD          + YGRGPIQL+   NY R            NNPDL+ATDP++SFK+AIW WMT Q  KPSCH VII +W P   D
Sbjct:   48 CPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGG----SAGTFTGGYCFVKQI--EQSD----------RYYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKD 190          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.531e-39
Identity = 79/164 (48.17%), Postives = 102/164 (62.20%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASS--DYCDPNYPC-RGKCY-GRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDV 482
            CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E+   SS  D  D  +PC  GK Y GRGPIQ+SWN+NY               NP+++A    ++F++A+W WMT +  KPSCH+V++ E++P   DV
Sbjct:   70 CPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNY--GPAGQALGFDGLRNPEIVANCSDIAFQTALWFWMTPRDTKPSCHQVMVGEYRPGPADV 231          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.317e-39
Identity = 85/161 (52.80%), Postives = 100/161 (62.11%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDVN 485
            CPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S +           YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIW WMTAQ  KPSCH+VI  +W P A D +
Sbjct:   40 CPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSGF-----------YGRGPIQLTGQSNY--DLAGQAIGQDLVNNPDLVATDATVSFKTAIWFWMTAQGNKPSCHDVITGQWTPSAADAS 186          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 4.317e-39
Identity = 78/165 (47.27%), Postives = 99/165 (60.00%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDP----NYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPP-KPSCHEVIIDEWKPPANDV 482
            CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC    YGRGP+QL WNYNY  C           + P+ +ATDPVLSF++A+W WM       PSCHEVI  EW P   D+
Sbjct:   84 CPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGEC--GNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADI 245          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.798e-38
Identity = 84/160 (52.50%), Postives = 99/160 (61.88%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            CPAR FYTYDAFI AA +FPAFG SG    + +RE+AAFF QT HETTGG       ++ WGYCF  E+  A+S    P Y      YGRGPIQL+   NY               NPDL++TD V+SFK+AIW WMTAQ  KPSCH+VI+  W P A D
Sbjct:   53 CPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGG-TRGSSDQFQWGYCFKEEINKATS----PPY------YGRGPIQLTGQSNYQAA--GNALGLDLVGNPDLVSTDAVVSFKTAIWFWMTAQGNKPSCHDVILGRWTPSAAD 199          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.389e-37
Identity = 85/163 (52.15%), Postives = 98/163 (60.12%), Query Frame = 3
Query:    9 ARCF----YTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPANDVN 485
            ARCF    YTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     + Y           YGRGPIQL+   NY              NNPDL+ATD  +SFK+AIW WMT Q  KPSCH+VI   W P A D +
Sbjct:   45 ARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNGY-----------YGRGPIQLTGQSNY--DLAGKAIEQDLVNNPDLVATDATVSFKTAIWFWMTPQGNKPSCHDVITGRWTPSAADTS 193          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.005e-36
Identity = 77/156 (49.36%), Postives = 94/156 (60.26%), Query Frame = 3
Query:   12 RCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPNYPCRGKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTAQPPKPSCHEVIIDEWKPPAND 479
            R FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G         ++SDY           +GRGPIQ+S+NYNY               NPDL+ +D  + FK+A+W WMT Q PKPS H+VI   W P + D
Sbjct:   17 RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSDY-----------FGRGPIQISYNYNY--GAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTD 150          
The following BLAST results are available for this feature:
BLAST of CX306023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI12_ORYSJ7.603e-4453.33Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI11_ORYSJ6.436e-4353.90Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIA_SOLCI1.753e-4052.20Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]
CHIA_SOLLC3.905e-4051.57Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ2.531e-3948.17Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC4.317e-3952.80Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR4.317e-3947.27Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI8_ORYSJ2.798e-3852.50Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_PETHY1.389e-3752.15Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHIT_AVESA2.005e-3649.36Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionC18013A11Rv Drought1 Citrus clementina cDNA clone C18013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306023 ID=CX306023; Name=CX306023; organism=Citrus clementina; type=EST; length=485bp
GATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
AAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGG
GAAGTTGGCGTTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCG
AGGGAAGTGCTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATT
ACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAAT
CCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTCCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTA
TCGACGAATGGAAACCACCAGCAAATGACGTAAAC
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