CX306023

Overview
NameCX306023
Unique NameCX306023
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length485
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 4.060e-21
Identity = 54/141 (38.30%), Postives = 74/141 (52.48%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN---YPCR--GKCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWM 410
            C  + FYT  +F+ AA+++  F N       KREIAAFFA   HET                C+  E+  A+ DYCD +   +PC+   K YGRGP+Q+SWN+NY               +PD +A DP +SFK+A+W WM
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNY--GPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIB_MAIZE (Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 5.302e-21
Identity = 55/143 (38.46%), Postives = 75/143 (52.45%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDP---NYPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMTA 416
            C  + FYT  AF+ A K +P F + G++   KREIAAFFA   HET               +C+  E+   S+ YCDP    +PC    K YGRGP+Q+SWNYNY               +P  +A D V++FK+A+W WM +
Sbjct:   89 CEGKNFYTRSAFLSAVKGYPGFAHGGSQVQGKREIAAFFAHATHET-------------GHFCYISEIN-KSNAYCDPTKRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRAIGFDGLGDPGRVARDAVVAFKAALWFWMNS 215          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 9.044e-21
Identity = 62/144 (43.06%), Postives = 71/144 (49.31%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGVASSDYCDPN----YPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWMT 413
            CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC    K YGRGP+QLSWNYNY               NP+ +ATD   SFK+A+W WMT
Sbjct:  107 CPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPCAAGKKYYGRGPLQLSWNYNY--ALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.489e-20
Identity = 55/141 (39.01%), Postives = 74/141 (52.48%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCDPN---YPCRG--KCYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWM 410
            C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC    K YGRGP+Q+SWNYNY               +P+ +A D V++FK+A+W WM
Sbjct:  100 CEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPCAAGQKYYGRGPLQISWNYNY--GPAGRDIGFNGLADPNRVAQDAVIAFKTALWFWM 224          
BLAST of CX306023 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.862e-20
Identity = 56/142 (39.44%), Postives = 72/142 (50.70%), Query Frame = 3
Query:    3 CPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGVASSDYCD----PNYPCRGK--CYGRGPIQLSWNYNYLRCXXXXXXXXXXXNNPDLLATDPVLSFKSAIWSWM 410
            C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC      +GRGPIQLSWN+NY                P+ ++ D V+SFK+A+W WM
Sbjct:   88 CAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPCSSSKGYHGRGPIQLSWNFNY--GPAGSANNFDGLGAPETVSNDVVVSFKTALWYWM 214          
The following BLAST results are available for this feature:
BLAST of CX306023 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI4_ORYSJ4.060e-2138.30Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIB_MAIZE5.302e-2138.46Endochitinase B (Fragment) OS=Zea mays PE=1 SV=1[more]
CHIP_BETVU9.044e-2143.06Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIA_MAIZE4.489e-2039.01Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI4_PHAVU5.862e-2039.44Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]

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Properties
Property NameValue
Genbank descriptionC18013A11Rv Drought1 Citrus clementina cDNA clone C18013A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306023 ID=CX306023; Name=CX306023; organism=Citrus clementina; type=EST; length=485bp
GATGCCCTGCCAGATGCTTCTACACTTATGATGCTTTTATAGAGGCAGCC
AAAGCTTTTCCAGCCTTTGGTAATTCTGGAAATGAAACCATGCGTAAAAG
AGAAATTGCTGCCTTTTTTGCCCAAACTGGCCATGAAACTACTGGGGGAT
GGCCCGATGCACCTGGTGGCGAATATGCTTGGGGATATTGCTTTAATAGG
GAAGTTGGCGTTGCGTCGTCCGACTACTGTGATCCTAACTATCCATGTCG
AGGGAAGTGCTATGGCCGAGGTCCAATTCAACTCTCTTGGAATTACAATT
ACTTACGGTGCGGAGAAGGCCTAGGGCTAGGAGAGGAGTTGTTGAACAAT
CCAGACCTTCTTGCTACTGATCCAGTACTATCATTCAAGTCAGCAATCTG
GTCCTGGATGACTGCACAGCCACCAAAGCCATCGTGCCACGAAGTCATTA
TCGACGAATGGAAACCACCAGCAAATGACGTAAAC
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