CX306066

Overview
NameCX306066
Unique NameCX306066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 5.261e-47
Identity = 91/174 (52.30%), Postives = 112/174 (64.37%), Query Frame = -2
Query:    9 LVLSFVLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTA-GDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 518
            +++S  L  + G+ G G  C  G+CCS+FGWCG T DYC  G CQS C         P  G   G GG+LG  IS  MF+ +L++RN+  C  + FY+Y+AFI AA++FP FG SG+   RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G    DYC P+  +PC
Sbjct:   19 VLVSAALAQNCGSQGGGKACASGQCCSKFGWCGNTNDYCGSGNCQSQC---------PGGGPGPGPGGDLGSAISNSMFDQMLKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERG-NPGDYCPPSSQWPC 182          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 6.871e-47
Identity = 89/167 (53.29%), Postives = 105/167 (62.87%), Query Frame = -2
Query:    9 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNET-MRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN--YPC 488
            A  CGS   G VCP   CCS+FGWCG T+DYC  GCQS C+   CG   P   +   G  +  I+SR +F+ +L +RND  CPA  FYTYDAF+ AA AFP F  +G +    KRE+AAF AQT HETTGGW  AP G YAWGYCF  E  GAA  DYC  +  +PC
Sbjct:   21 AEQCGSQAGGAVCPNCLCCSQFGWCGSTSDYCGAGCQSQCSAAGCGGGGPTPPSGSGGSGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPC 187          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 8.974e-47
Identity = 89/173 (51.45%), Postives = 110/173 (63.58%), Query Frame = -2
Query:    9 LVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPC 518
            LVL  V   SA  CG+   G +CPGG CCS+FGWCG T++YC +GCQS C+           G++G GG L  +IS   F ++L++RND  C  + FYTYDAF+ AAKAFP F N G+   +KREIAAF  QT HETTGGWP AP G YAWGYCF RE   ++       +PC
Sbjct:   10 LVLFIVSCCSAEQCGTQAGGALCPGGLCCSKFGWCGSTSEYCGDGCQSQCS-----------GSSG-GGTLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPC 170          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 1.531e-46
Identity = 94/164 (57.32%), Postives = 108/164 (65.85%), Query Frame = -2
Query:    9 GNCGSGVVCPGGECCSRFGWCGLTTDYCC-EGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTG--GWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 485
            G    G +CPGG CCS+FGWCG T DYC   GCQS C+           G A   G L  +ISR+ F  +L +RND  CPAR FYTYDAFI AA++FPAF  +G++  RKREIAAF AQT HETTG  GW  AP G YAWGYC+NRE+   SS YC  DPNYPC
Sbjct:    4 GRQAGGALCPGGLCCSQFGWCGSTADYCTVPGCQSQCS---------GSGPAPGPGGLTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWA-APDGPYAWGYCYNRELNPPSS-YCASDPNYPC 156          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.999e-46
Identity = 95/179 (53.07%), Postives = 112/179 (62.57%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            F L    +L  SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:    6 FLLFSVLLLSASAEQCGSQAGGALCASGLCCSKFGWCGDTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPC 172          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 1.999e-46
Identity = 85/168 (50.60%), Postives = 106/168 (63.10%), Query Frame = -2
Query:    9 VLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYC--DPNYPC 503
            V G   G+   G +CP   CCS++GWCG T+ YC  GCQS C+   CG   P   + G G  +  I+SR +F+ +L +RND  CPA+ FYTYDAF+ AA AFP+F  +G+   RKRE+AAF AQT HETTGGW  AP G Y+WGYCF  E  G   SDYC     +PC
Sbjct:   18 VRGEQCGSQAGGALCPNCLCCSQYGWCGSTSAYCGSGCQSQCSGS-CGGGGPTPPSGGGGSGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPC 184          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 2.611e-46
Identity = 91/176 (51.70%), Postives = 112/176 (63.64%), Query Frame = -2
Query:    9 LVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD-PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 518
            L  +      A  CG+   G  CP   CCSR+GWCG T+D+C +GCQS C+   CG    P   +  DG  +G I+ R +FE LL +RND  CPAR FYTY+AF+ AA AFPAFG +GN   RKRE+AAF  QT HETTGGWP AP G ++WGYCF +E     SDYC P+  +PC
Sbjct:   22 LAAALATAARAEQCGAQAGGARCPNCLCCSRWGWCGTTSDFCGDGCQSQCSG--CGPTPTPTPPSPSDG--VGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQN-PPSDYCQPSPEWPC 192          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIA_SECCE (Basic endochitinase A OS=Secale cereale GN=rsca PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.410e-46
Identity = 93/181 (51.38%), Postives = 116/181 (64.09%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCG----ECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            F+++   V    A  CGS   G  CP   CCSRFGWCG T+DYC +GCQS C    CG       P    +G GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC
Sbjct:    7 FAVLAMAVTMAVAEQCGSQAGGATCPNCLCCSRFGWCGSTSDYCGDGCQSQC--AGCGGGGTPVTPTPTPSGGGG-VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAAGAFPGFGTTGSTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPC 183          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 3.410e-46
Identity = 96/180 (53.33%), Postives = 114/180 (63.33%), Query Frame = -2
Query:    9 FSLVLSFVL-GGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            FSL+ S +L   SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:    5 FSLLFSLLLLNASAEQCGSQAGGALCAPGLCCSKFGWCGNTNDYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPC 172          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 4.454e-46
Identity = 92/172 (53.49%), Postives = 106/172 (61.63%), Query Frame = -2
Query:   33 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGE----LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYC-FNREVGAASSD 524
            FSL LS  + GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G      G  G GG     L  II   MF+D+L+YRND +CPA  FYTY+AFI AAK FP FGN+G++ MRKREIAAF  QT HET G WP A G +Y WGYC  N   G    D
Sbjct:    9 FSLFLSLSVRGSAEQCGQQAGDALCPGGLCCSSYGWCGTTADYCGDGCQSQCDGGGGGGGGGGGGGGGGGGGGDGYLSDIIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHMNYNYGLCGDD 180          
The following BLAST results are available for this feature:
BLAST of CX306066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_SOLTU5.261e-4752.30Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI12_ORYSJ6.871e-4753.29Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI2_PEA8.974e-4751.45Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_GOSHI1.531e-4657.32Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_SOLTU1.999e-4653.07Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI1_ORYSJ1.999e-4650.60Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI2_ORYSJ2.611e-4651.70Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIA_SECCE3.410e-4651.38Basic endochitinase A OS=Secale cereale GN=rsca PE... [more]
CHI3_SOLTU3.410e-4653.33Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHIB_POPTR4.454e-4653.49Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC18013E10Rv Drought1 Citrus clementina cDNA clone C18013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306066 ID=CX306066; Name=CX306066; organism=Citrus clementina; type=EST; length=525bp
TTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCC
AACTTCCCTATTAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCAT
CGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCA
ATTTCTCTTTTACGCATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAA
AGCTTTGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCATCTGGCAG
GGCATCGTTTATCATTTCTATACTCAAGCAAGTCTTCAAACATCTTCCTT
GAGATGATCTTGCCCAGTTCACCGCCATCACCAGCCGTCCCGTCGTCGGG
ATCACATTCACCGCAAACAACCTGATTACAGTTACTTTGGCAGCCTTCAC
AACAGTAGTCTGTTGTTAGGCCACACCAACCAAATCGACTACAACACTCC
CCTCCTGGGCACACAACGCCGCTTCCACAGTTCCCTGCTGAGCCTCCTAG
TACAAAAGATAAAACCAGAGAGAAA
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