CX306066

Overview
NameCX306066
Unique NameCX306066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 5.817e-46
Identity = 89/170 (52.35%), Postives = 110/170 (64.71%), Query Frame = -2
Query:    9 AGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELG-----KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 488
            A  CGS   G +CP   CCS +GWCG T+DYC +GCQS C+   CG      G  G GG  G      ++S+++FE LL +RND  CPAR FYTYDA + AA AFP F  +G++  RKRE+AAF  QT HETTGGW  AP G Y+WGYCF  E+GA +S YC P+  +PC
Sbjct:   23 AEQCGSQAGGALCPNCLCCSSYGWCGSTSDYCGDGCQSQCDG--CGGGGGGGGGGGGGGGGGGGAVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATAS-YCVPSAEWPC 189          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 7.597e-46
Identity = 91/176 (51.70%), Postives = 110/176 (62.50%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            FSL+L        G    G  C  G CCS FGWCG T DYC  G CQS C      +  P  G    GG++G +IS  MF+ +L++RND  C  +  FY+Y+AFI AA++F  FG +G+ T RKREIAAFFAQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:    9 FSLLLLTASAEQCGKQAGGARCAAGLCCSNFGWCGNTNDYCGPGKCQSQCPSGPSPK-PPTPGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSGQWPC 182          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 3.770e-45
Identity = 92/179 (51.40%), Postives = 111/179 (62.01%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            F L    +L  SA  CGS   G +C  G CCS+FGWCG T +YC  G CQS C            G  G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AF+ AA +FP FG +G+ T RKREIAAF AQT HETTGGWP AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:   10 FLLFSVLLLSASAEQCGSQAGGALCASGLCCSKFGWCGNTNEYCGPGNCQSQC-----------PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQG-SPGDYCTPSSQWPC 176          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.924e-45
Identity = 86/173 (49.71%), Postives = 109/173 (63.01%), Query Frame = -2
Query:    9 VLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP-NYPC 515
            +L   LG  A  CGS   G VCP G CCS+FG+CG T  YC +GCQS C         P   T G  G++G+++   +F+ +L+YRND RC    FYTYDAFI AA++F  FG +G++  +K+E+AAF AQT HETTGGWP AP G YAWGYCF  E       YC P ++PC
Sbjct:   14 LLPLFLGSKAEQCGSQAGGAVCPNGLCCSKFGFCGSTDPYCGDGCQSQCKSSPTPTI-PTPSTGG--GDVGRLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQN-TQEVYCSPKDWPC 182          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 4.924e-45
Identity = 93/179 (51.96%), Postives = 110/179 (61.45%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARC-FYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            F L    +L  SA  CGS   G +C  G CCS+FGWCG T DYC  G CQS C               G  G+LG +IS  MF+ +L +RND  C  +  FY+Y+AFI AA +FP FG +G+ T RKREIAAFFAQT HETTGGW  AP G YAWGYCF RE G +  DYC P+  +PC
Sbjct:    6 FLLFSVLLLSASAEQCGSQAGGALCASGLCCSKFGWCGNTNDYCGPGNCQSQC-------------PGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQG-SPGDYCTPSNQWPC 170          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 179.104 bits (453), Expect = 1.097e-44
Identity = 82/169 (48.52%), Postives = 106/169 (62.72%), Query Frame = -2
Query:    9 VLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECD--PDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD--PNYPC 503
            V G   G+   G +CP   CCS++GWCG T+DYC  GCQS C+    G C   P   ++G G  +  IIS  +F+ +L +RND+ C A+ FYTYDAF+ AA A+P F  +G+    KRE+AAF AQT HETTGGWP AP G Y+WGYCF  E    +  YC+  P +PC
Sbjct:   16 VRGEQCGSQAGGALCPNCLCCSQYGWCGSTSDYCGAGCQSQCS----GGCGGGPTPPSSGGGSGVASIISPSLFDQMLLHRNDQACAAKGFYTYDAFVAAANAYPDFATTGDADTCKREVAAFLAQTSHETTGGWPTAPDGPYSWGYCFKEENNGNAPTYCEPKPEWPC 180          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 1.433e-44
Identity = 92/177 (51.98%), Postives = 108/177 (61.02%), Query Frame = -2
Query:    9 LVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEG-CQSNCNQVVCGECDPDDGTAGDG-GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 518
            LVL  +L  SA  CG    G  CP G CCS FGWCG T DYC  G CQS C         P   T G   G++  IIS  MF+ +L++RND  C  + FYTY+AFI AA++F  FG +G+ T RKRE+AAFFAQT HETTGGW  AP G YAWGYC+ RE G   S YC     +PC
Sbjct:   13 LVLFLLLAVSAEQCGKQAGGARCPSGMCCSNFGWCGNTQDYCGPGKCQSQCPSGPGPTPRPPTPTPGPSTGDISNIISSSMFDQMLKHRNDNTCQGKSFYTYNAFITAARSFRGFGTTGDTTRRKREVAAFFAQTSHETTGGWDTAPDGRYAWGYCYLREQGNPPS-YCVQSSQWPC 188          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 177.948 bits (450), Expect = 2.444e-44
Identity = 90/177 (50.85%), Postives = 111/177 (62.71%), Query Frame = -2
Query:    9 FSLVLSFVLGGSAGNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 524
            F++V        A  CGS   G  CP   CCSRFGWCG +T YC +GCQS C+    G   P   T   GG +  I+SR +F+ +L +RND  C A+ FYTYDAF+ AA AF  FG +G    RKRE+AAF AQT HETTGGW  AP G +AWGYCF +E G A+S+YC P+  +PC
Sbjct:    7 FAVVAMAATMAVAEQCGSQAGGATCPNCLCCSRFGWCG-STPYCGDGCQSQCSGCGGGST-PVTPTPSGGGGVSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ATSNYCTPSAQWPC 180          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 81/168 (48.21%), Postives = 100/168 (59.52%), Query Frame = -2
Query:    9 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 485
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPC 193          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.875e-36
Identity = 81/168 (48.21%), Postives = 100/168 (59.52%), Query Frame = -2
Query:    9 GNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDG-----TAGDGGELG--KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 485
            G    G  CP   CCSR+GWCGLT DYC  GCQS C   V  +   DD      TA  GG  G   +++   FE +L +R+D  CPAR FY Y AF+ AA AFPAF  +G+   RKRE+AAF AQT H T+       GG Y+WGYC+ +EV  A+SD+C PN  +PC
Sbjct:   36 GRQAGGARCPNRLCCSRWGWCGLTDDYCKGGCQSQCR--VSRDGGDDDVAAVLLTAPGGGRAGVASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPC 193          
The following BLAST results are available for this feature:
BLAST of CX306066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHI9_ORYSJ5.817e-4652.35Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_SOLTU7.597e-4651.70Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC3.770e-4551.40Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHIX_PEA4.924e-4549.71Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_SOLTU4.924e-4551.96Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_ORYSJ1.097e-4448.52Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI3_TOBAC1.433e-4451.98Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3... [more]
CHI1_HORVU2.444e-4450.8526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI7_ORYSJ1.875e-3648.21Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI1.875e-3648.21Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]

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Properties
Property NameValue
Genbank descriptionC18013E10Rv Drought1 Citrus clementina cDNA clone C18013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306066 ID=CX306066; Name=CX306066; organism=Citrus clementina; type=EST; length=525bp
TTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCC
AACTTCCCTATTAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCAT
CGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCA
ATTTCTCTTTTACGCATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAA
AGCTTTGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCATCTGGCAG
GGCATCGTTTATCATTTCTATACTCAAGCAAGTCTTCAAACATCTTCCTT
GAGATGATCTTGCCCAGTTCACCGCCATCACCAGCCGTCCCGTCGTCGGG
ATCACATTCACCGCAAACAACCTGATTACAGTTACTTTGGCAGCCTTCAC
AACAGTAGTCTGTTGTTAGGCCACACCAACCAAATCGACTACAACACTCC
CCTCCTGGGCACACAACGCCGCTTCCACAGTTCCCTGCTGAGCCTCCTAG
TACAAAAGATAAAACCAGAGAGAAA
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