CX306066

Overview
NameCX306066
Unique NameCX306066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10294 contig Ccv1_Contig10294:71..595. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIT_CARPA (Endochitinase OS=Carica papaya PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.941e-33
Identity = 64/103 (62.14%), Postives = 79/103 (76.70%), Query Frame = -2
Query:    9 KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 311
            KIISR MF+ +L++RN+  CPA+ FYTYDAF+ AAK+FP+FG +G+  +RKRE+AAF  QT HETTGGWP AP G YAWGYCF +E    SS+YC   P YPC
Sbjct:    4 KIISRSMFDQMLKHRNNPACPAKGFYTYDAFLAAAKSFPSFGTTGSTDVRKRELAAFLGQTSHETTGGWPSAPDGPYAWGYCFLKERN-PSSNYCAPSPRYPC 105          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.803e-32
Identity = 74/180 (41.11%), Postives = 94/180 (52.22%), Query Frame = -2
Query:    9 SLVLSFVLGGSA--GNCGS---GVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDP----NYPC 521
            SL+LS +LG S+    CGS      CP   CCS  G+CGLT  YCC GC S C                         +  MFE +L  RN+  CP + FYTYDA+  A + +P FG +G++  RKRE+AAFFAQT  ET+G         + WGYC   E+   +SDYCDP    +YPC
Sbjct:   10 SLLLSLLLGVSSDTAQCGSQAGNATCPNDLCCSSGGYCGLTVAYCCAGCVSQCRNC--------------------FFTESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELN-PNSDYCDPKTKSSYPC 168          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 3.099e-31
Identity = 62/107 (57.94%), Postives = 77/107 (71.96%), Query Frame = -2
Query:    9 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 323
            G +  I+SR  F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   +KRE+AAF AQT HETTGGW  AP G +AWGYCF +E G ASSDYC P+  +PC
Sbjct:   23 GSVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERG-ASSDYCTPSAQWPC 128          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.008e-30
Identity = 61/107 (57.01%), Postives = 76/107 (71.03%), Query Frame = -2
Query:    9 GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 323
            G +  IIS   F+ +L +RND  C A+ FYTYDAF+ AA AFP FG +G+   RKR++AAF AQT HETTGGW  AP G +AWGYCF +E GAA +DYC P+  +PC
Sbjct:   23 GSVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAA-ADYCTPSAQWPC 128          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 8.438e-29
Identity = 57/105 (54.29%), Postives = 73/105 (69.52%), Query Frame = -2
Query:    9 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYC--DPNYPC 317
            +  +IS+ +FE +L +RND+ C A+ FYTY+AFI A K F AFG +G+   R +EIAAF AQT HETTGGW  AP G Y+WGYC+NRE G +  DYC     +PC
Sbjct:    5 ISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQG-SPGDYCASSQQWPC 108          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.630e-27
Identity = 59/113 (52.21%), Postives = 73/113 (64.60%), Query Frame = -2
Query:    3 GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPNYPCRG 341
            G +G    +G II+R MFE +L +R D+ C    FYTYDAFI+AA  FP FG +GN+  R+RE+AAFF QT HETTGGW  AP G +AWGYC   E+  +     DP Y  RG
Sbjct:   19 GASGQQAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPS-----DPPYYGRG 125          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIC_POPTR (Acidic endochitinase WIN6.2C (Fragment) OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 6.686e-26
Identity = 62/115 (53.91%), Postives = 72/115 (62.61%), Query Frame = -2
Query:  198 FSLVLSFVLGGSAGNCG---SGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGE-CDPDDGTAGDG--GELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAF 524
            FSL LS  + GSA  CG      +CPGG CCS +GWCG T DYC +GCQS C+    G+ CD   G  GDG  G L  II +  F+ LL++RND RC A  FYTYDAFI AAK F
Sbjct:   10 FSLFLSLSVRGSAEQCGRQAGDALCPGGLCCSFYGWCGTTVDYCGDGCQSQCDG---GDGCDGGGGGGGDGDDGYLSDIIPKSTFDALLKFRNDPRCHAVGFYTYDAFISAAKEF 121          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = -2
Query:   30 ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDY 320
            ++G I++  +F ++L+ RND RCPA+ FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   A  G +A GYCF RE     S +
Sbjct:   18 DVGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSA-DGPFAGGYCFVREGNQMGSGF 113          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.151e-24
Identity = 54/119 (45.38%), Postives = 69/119 (57.98%), Query Frame = -2
Query:    9 GTAGDGG------ELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASS--DYCDPNYPC 341
            G  G GG       +  I+S +++  L  +++D  CPAR FYTY +F+ AA  FP F  +G    RKRE+AAF AQ  HETTGGW  AP G YAWG C+  E+   SS  D  D  +PC
Sbjct:   35 GGGGGGGYSPSPSPVSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPC 153          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.394e-23
Identity = 53/96 (55.21%), Postives = 67/96 (69.79%), Query Frame = -2
Query:   30 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDY 317
            +G I++  +F+ +L+ RND RC A  FYTYDAFI AA +FP FG +G++T RK+EIAAFF QT HETTGG   +P G YA GYCF RE     + Y
Sbjct:   26 VGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGG-TLSPDGPYAGGYCFLREGNQMGNGY 120          
The following BLAST results are available for this feature:
BLAST of CX306066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_CARPA1.941e-3362.14Endochitinase OS=Carica papaya PE=1 SV=1[more]
CHI8_POPTR2.803e-3241.11Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI2_HORVU3.099e-3157.9426 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIC_SECCE2.008e-3057.01Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHID_SOLLC8.438e-2954.29Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI11_ORYSJ4.630e-2752.21Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIC_POPTR6.686e-2653.91Acidic endochitinase WIN6.2C (Fragment) OS=Populus... [more]
CHIB_SOLLC2.151e-2454.64Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI10_ORYSJ2.151e-2445.38Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIT_PETHY1.394e-2355.21Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18013E10Rv Drought1 Citrus clementina cDNA clone C18013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306066 ID=CX306066; Name=CX306066; organism=Citrus clementina; type=EST; length=525bp
TTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCC
AACTTCCCTATTAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCAT
CGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCA
ATTTCTCTTTTACGCATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAA
AGCTTTGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCATCTGGCAG
GGCATCGTTTATCATTTCTATACTCAAGCAAGTCTTCAAACATCTTCCTT
GAGATGATCTTGCCCAGTTCACCGCCATCACCAGCCGTCCCGTCGTCGGG
ATCACATTCACCGCAAACAACCTGATTACAGTTACTTTGGCAGCCTTCAC
AACAGTAGTCTGTTGTTAGGCCACACCAACCAAATCGACTACAACACTCC
CCTCCTGGGCACACAACGCCGCTTCCACAGTTCCCTGCTGAGCCTCCTAG
TACAAAAGATAAAACCAGAGAGAAA
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