CX306066

Overview
NameCX306066
Unique NameCX306066
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length525
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 7.916e-19
Identity = 45/82 (54.88%), Postives = 55/82 (67.07%), Query Frame = -2
Query:   72 LGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWG 317
            +  +IS  +FE +L +R         FYTYDAFI AAK+FPAF  +G+  +RKRE+AAF AQT HETTGGWP AP G Y  G
Sbjct:    1 VSSVISSSLFEKMLLHRG--------FYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG 74          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIA_MAIZE (Endochitinase A OS=Zea mays PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.350e-18
Identity = 58/165 (35.15%), Postives = 77/165 (46.67%), Query Frame = -2
Query:    9 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPC 491
            +A NCG    C    CCS+FG+CG T  YC +GCQS  C     G      G  G GG     +    F + ++ +    C  + FYT  AF+ A  A+P F + G E   KREIAAFFA   HET               +C+  E+   S+ YCD +   +PC
Sbjct:   24 AAQNCG----CQPNFCCSKFGYCGTTDAYCGDGCQSGPCRSGGGGGGGGGGGGGGSGGANVANVVTDAFFNGIKNQAGSGCEGKNFYTRSAFLSAVNAYPGFAHGGTEVEGKREIAAFFAHVTHET-------------GHFCYISEIN-KSNAYCDASNRQWPC 170          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI5_ORYSJ (Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht5 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.764e-18
Identity = 60/179 (33.52%), Postives = 83/179 (46.37%), Query Frame = -2
Query:    6 SLVLSFVLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSN-CNQVVCGECDPDDGTAGDGGELG---KIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN---YPCR 521
            +L+LS     SA NCG    C    CCS++G+CG   DYC +GC+S  C     G      G  G GG  G   + +  + F + ++ +    C  + FYT  +F+ AA ++  F         KREIAAFFA   HET                C+  E+  AS DYCD N   +PC+
Sbjct:   18 ALLLSATGQASAQNCG----CQSNMCCSKWGYCGTGKDYCGDGCRSGPCYGGGGGGGGGGGGGGGGGGGSGVSVESVVTEAFFNGIKNQAPNGCAGKNFYTRQSFLNAAHSYSGFARDRTNDDSKREIAAFFAHVTHET-------------GHMCYINEINGASMDYCDKNNKQWPCQ 179          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHI4_PHAVU (Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.303e-18
Identity = 58/165 (35.15%), Postives = 76/165 (46.06%), Query Frame = -2
Query:    9 SAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCD----PNYPC 491
            SA NCG    C  G CCS++G+CG   DYC  GCQ    Q  C    P      +      I++      +++ + D  C  + FYT DAF+ A  ++  FG  G+E   KREIAA FA   HET               +C+  E+  AS DYCD      YPC
Sbjct:   22 SAQNCG----CAEGLCCSQYGYCGTGEDYCGTGCQ----QGPCTTASPPPSNNVNAD----ILTADFLNGIID-QADSGCAGKNFYTRDAFLSALNSYTDFGRVGSEDDSKREIAAAFAHFTHET-------------GHFCYIEEIDGASKDYCDEESIAQYPC 160          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.547e-17
Identity = 65/186 (34.95%), Postives = 79/186 (42.47%), Query Frame = -2
Query:    9 SLVLSFVLGGSAGNCGSGVVCPGGECCSRFGWCGLTTDYCCEGCQSNCNQVVCGECDPDD----------GTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNRE-VGAASSDYCDPN----YPC 521
            S++ SF     A NCG    C    CCS FG+CG  T YC  G   NC    C    P            GT G G  +  I+S+  F+ ++  +    CP + FYT  AF+ A    P FGN G+    KREIAAFFA   HETT               C   E  G     YCD +    YPC
Sbjct:   16 SVISSFPTSLFAQNCG----CAPNLCCSNFGFCGTGTPYCGVG---NCQSGPCEGGTPTTPTTPTTPTTPGTGGGGSSVSDIVSQAFFDGIIG-QAAASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETT-------------NLCHIEERDGDVGDAYCDQDKAAQYPC 178          
BLAST of CX306066 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 4.803e-16
Identity = 53/149 (35.57%), Postives = 71/149 (47.65%), Query Frame = -2
Query:    9 CCSRFGWCGLTTDYCCEGCQSNCNQVVCGEC-DPDDGTAGDGGELGKIISRKMFEDLLEYRNDKRCPARCFYTYDAFIEAAKAFPAFGNSGNETMRKREIAAFFAQTGHETTGGWPDAPGGEYAWGYCFNREVGAASSDYCDPN--YPC 446
            CCS+ G+CG + DYC  GCQ+       G C DP +G   DG      I  + F D +  +    CP + FYT   F+EA  A+P FG    +  RKREIAA+FA   HET                C+  E    +++YC  +  YPC
Sbjct:   11 CCSQHGYCGNSYDYCGPGCQA-------GPCWDPCEG---DGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHET-------------GHLCYIEERDGHANNYCQESQQYPC 136          
The following BLAST results are available for this feature:
BLAST of CX306066 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIT_AVESA7.916e-1954.88Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
CHIA_MAIZE1.350e-1835.15Endochitinase A OS=Zea mays PE=1 SV=1[more]
CHI5_ORYSJ1.764e-1833.52Chitinase 5 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI4_PHAVU2.303e-1835.15Endochitinase PR4 OS=Phaseolus vulgaris GN=CHI4 PE... [more]
CHIP_BETVU2.547e-1734.95Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHIT_DIOJA4.803e-1635.57Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]

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Properties
Property NameValue
Genbank descriptionC18013E10Rv Drought1 Citrus clementina cDNA clone C18013E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306066 ID=CX306066; Name=CX306066; organism=Citrus clementina; type=EST; length=525bp
TTCCCTCGACATGGATAGTTAGGATCACAGTAGTCGGACGACGCAGCGCC
AACTTCCCTATTAAAGCAATATCCCCAAGCATATTCGCCACCAGGTGCAT
CGGGCCATCCCCCAGTAGTTTCATGGCCAGTTTGGGCAAAAAAGGCAGCA
ATTTCTCTTTTACGCATGGTTTCATTTCCAGAATTACCAAAGGCTGGAAA
AGCTTTGGCTGCCTCTATAAAAGCATCATAAGTGTAGAAGCATCTGGCAG
GGCATCGTTTATCATTTCTATACTCAAGCAAGTCTTCAAACATCTTCCTT
GAGATGATCTTGCCCAGTTCACCGCCATCACCAGCCGTCCCGTCGTCGGG
ATCACATTCACCGCAAACAACCTGATTACAGTTACTTTGGCAGCCTTCAC
AACAGTAGTCTGTTGTTAGGCCACACCAACCAAATCGACTACAACACTCC
CCTCCTGGGCACACAACGCCGCTTCCACAGTTCCCTGCTGAGCCTCCTAG
TACAAAAGATAAAACCAGAGAGAAA
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