CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLT2B_ORYSJ (Non-specific lipid-transfer protein 2B OS=Oryza sativa subsp. japonica GN=LTP2-B PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.792e-15
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   ++PC+SY         ACC G+ +LN+A+ TT DR T CNC+K  A  I GLN     ++P  C    PY ++  ++CS VN
Sbjct:   29 CGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAATTTADRRTACNCLKNVAGSISGLNAGNAASIPSKCGVSIPYTISPSIDCSSVN 117          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 4.952e-15
Identity = 38/88 (43.18%), Postives = 51/88 (57.95%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI Y    GAV PACC+GI  +N  ++TT DR T CNC+K+ +  I G+N +    LP  C    PYK++    C+ V
Sbjct:    3 CGQVSSSLAPCIGYVRGGGAVPPACCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATV 90          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  130 QVTIWLTPCISY--GVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            QVT  L PCI+Y  G   GAV P CC GI +LN+A++TT  R   C C+K  AA I G+N+   + LP  C    PYK++   +C+ V
Sbjct:   32 QVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 119          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_GOSHI (Non-specific lipid-transfer protein OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.468e-15
Identity = 39/88 (44.32%), Postives = 52/88 (59.09%), Query Frame = 1
Query:  130 QVTIWLTPCISY--GVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            QVT  L PCI+Y  G   GAV P CC GI +LN+A++TT  R   C C+K  AA I G+N+   + LP  C    PYK++   +C+ V
Sbjct:   28 QVTNSLAPCINYLRGSGAGAVPPGCCTGIKSLNSAAQTTPVRQAACRCIKSAAAGITGINFGLASGLPGKCGVNIPYKISPSTDCNSV 115          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.447e-15
Identity = 37/90 (41.11%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPA-CCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   + PCISY   +G+   A CC G+ +LN A++TT DR   CNC+K  AA + GLN     ++P  C    PY ++   +CS+VN
Sbjct:   31 CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRVN 120          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_SPIOL (Non-specific lipid-transfer protein OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.882e-14
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C  V+  L PCI Y +  G +   CC GI ALNAA+ TT DR T CNC+K  A  I G+NY +   LP +C    PY ++    C+ V+
Sbjct:   30 CGMVSSKLAPCIGY-LKGGPLGGGCCGGIKALNAAAATTPDRKTACNCLKSAANAIKGINYGKAAGLPGMCGVHIPYAISPSTNCNAVH 117          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_ELECO (Non-specific lipid-transfer protein OS=Eleusine coracana PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.210e-14
Identity = 36/91 (39.56%), Postives = 57/91 (62.64%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCD-GITALNAASKTTEDRTTLCNC-VKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV+  + PC++Y    GA   A C  G+ +LNAA++TT DR   CNC +K  A+R+ GLN  + +++P  C  + PY ++  ++CS+VN
Sbjct:    4 CGQVSSAIGPCLAYARGAGAAPSASCQSGVRSLNAAARTTADRRAACNCSLKSAASRVSGLNAGKASSIPGRCGVRLPYAISASIDCSRVN 94          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSJ (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. japonica GN=LTP PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP--ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   + PC++Y   RG   P  ACC G+ +L AA+ TT DR T CNC+K  A  I GLN     ++P  C    PY ++  ++CS+V+
Sbjct:   28 CGQVNSAVGPCLTYA--RGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_ORYSI (Non-specific lipid-transfer protein 1 OS=Oryza sativa subsp. indica GN=LTP PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP--ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   + PC++Y   RG   P  ACC G+ +L AA+ TT DR T CNC+K  A  I GLN     ++P  C    PY ++  ++CS+V+
Sbjct:   28 CGQVNSAVGPCLTYA--RGGAGPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIKGLNAGNAASIPSKCGVSVPYTISASIDCSRVS 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.192e-14
Identity = 37/88 (42.05%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L PCI+Y    G V   CC+G+ +LN A+KTT DR   CNC+K     I GLN +    LP  C    PYK++   +C  V
Sbjct:    3 CGQVSSSLAPCINYLRAGGVVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSV 90          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLT2B_ORYSJ3.792e-1540.45Non-specific lipid-transfer protein 2B OS=Oryza sa... [more]
NLTP1_PRUAR4.952e-1543.18Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP2_GOSHI6.468e-1544.32Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP1_GOSHI6.468e-1544.32Non-specific lipid-transfer protein OS=Gossypium h... [more]
NLTP_MAIZE8.447e-1541.11Non-specific lipid-transfer protein OS=Zea mays PE... [more]
NLTP_SPIOL1.882e-1442.70Non-specific lipid-transfer protein OS=Spinacia ol... [more]
NLTP_ELECO3.210e-1439.56Non-specific lipid-transfer protein OS=Eleusine co... [more]
NLTP1_ORYSJ4.192e-1440.66Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
NLTP1_ORYSI4.192e-1440.66Non-specific lipid-transfer protein 1 OS=Oryza sat... [more]
LTP1_MORNI4.192e-1442.05Non-specific lipid-transfer protein 1 OS=Morus nig... [more]

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Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
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