CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.475e-14
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPA-CCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV+  + PC+SY   +G+   A CC G+ +LN+A++TT DR   CNC+K  A  I GLN  +  ++P  C    PY ++   +CS+V+
Sbjct:   33 CGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGIRGLNVGKAASIPSKCGVSIPYTISTSTDCSRVS 122          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLPN (Non-specific lipid-transfer protein 1 OS=Solanum pennellii GN=LTP1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.593e-13
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC+ Y   RG +   CC G+  L  ++KTT DR T C C+K  A  I G++ ++   +P +C+   PYK++   +CS V
Sbjct:   27 CGQVTAGLAPCLPYLQGRGPLG-GCCGGVKGLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.081e-13
Identity = 35/88 (39.77%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC+ Y + RG +   CC G+  L   ++TT DR T C C+K  A+   GL+  +  +LP  C    PYK++   +CSKV
Sbjct:   27 CGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAASSFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_SOLLC (Non-specific lipid-transfer protein 1 OS=Solanum lycopersicum GN=TSW12 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.717e-13
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC+ Y   RG +   CC G+  L  ++KTT DR T C C+K  A  I G++ ++   +P +C+   PYK++   +CS V
Sbjct:   27 CGQVTAGLAPCLPYLQGRGPLG-GCCGGVKNLLGSAKTTADRKTACTCLKSAANAIKGIDLNKAAGIPSVCKVNIPYKISPSTDCSTV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP4_ORYSJ (Non-specific lipid-transfer protein 4 OS=Oryza sativa subsp. japonica GN=Os12g0114500 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.549e-13
Identity = 36/90 (40.00%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMR-GAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   L PCI Y   R  A    CCDG+  LN+A+ TT DR T C C+K+  + + GL  D V  +P  C    PY ++   +CS+V+
Sbjct:   30 CGQVVSMLAPCIMYATGRVSAPTGGCCDGVRTLNSAAATTADRQTTCACLKQQTSAMGGLRPDLVAGIPSKCGVNIPYAISPSTDCSRVH 119          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_TOBAC (Non-specific lipid-transfer protein 1 OS=Nicotiana tabacum GN=LTP1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.635e-13
Identity = 36/88 (40.91%), Postives = 49/88 (55.68%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC++Y    G +   CC G+ AL  +++TTEDR   C C+K  A  I G+N  +   LP  C    PYK++   +CSKV
Sbjct:   27 CGQVTSNLAPCLAYLRNTGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIPYKISPSTDCSKV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_SORBI (Non-specific lipid-transfer protein 1 OS=Sorghum bicolor GN=LTP1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 34/90 (37.78%), Postives = 51/90 (56.67%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRG-AVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV+  +  C+SY   +G A    CC G+ +LN+A++TT DR   CNC+K  A  I GLN     ++P  C    PY ++   +CS+V+
Sbjct:   29 CGQVSSAIALCLSYARGQGFAPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGISGLNAGNAASIPSKCGVSVPYTISTSTDCSRVS 118          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_ARATH (Non-specific lipid-transfer protein 1 OS=Arabidopsis thaliana GN=LTP1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.054e-13
Identity = 37/90 (41.11%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARI--PGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V   L  CI Y +  G + PACC G+  LN+ +KTT DR   CNC+ +GAAR    GLN  R   +P  C    PYK++    C  V
Sbjct:   29 CGSVNSNLAACIGYVLQGGVIPPACCSGVKNLNSIAKTTPDRQQACNCI-QGAARALGSGLNAGRAAGIPKACGVNIPYKISTSTNCKTV 117          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP3_PRUDU (Non-specific lipid-transfer protein 3 OS=Prunus dulcis PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.906e-13
Identity = 34/90 (37.78%), Postives = 50/90 (55.56%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIP--GLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV   LTPCI+Y    GA+ P+CC G+ +L + ++TT DR ++CNC+K+    IP    N      LP  C    PYK++   +C  +
Sbjct:   33 CGQVVNNLTPCINYVANGGALNPSCCTGVRSLYSLAQTTADRQSICNCLKQAVNGIPYTNANAGLAAGLPGKCGVNIPYKISPSTDCKSI 122          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLLC (Non-specific lipid-transfer protein 2 OS=Solanum lycopersicum GN=LE16 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.033e-12
Identity = 35/88 (39.77%), Postives = 48/88 (54.55%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C +VT  L PC+ Y   RG +   CC G+  L  A+KT EDR T C C+K  A  I G++  +   LP +C    PYK++   +CS V
Sbjct:   27 CGEVTSGLAPCLPYLEGRGPLG-GCCGGVKGLLGAAKTPEDRKTACTCLKSAANSIKGIDTGKAAGLPGVCGVNIPYKISPSTDCSTV 113          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP2_SORBI5.475e-1438.89Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP1_SOLPN1.593e-1338.64Non-specific lipid-transfer protein 1 OS=Solanum p... [more]
NLTP2_SOLPN2.081e-1339.77Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP1_SOLLC2.717e-1338.64Non-specific lipid-transfer protein 1 OS=Solanum l... [more]
NLTP4_ORYSJ3.549e-1340.00Non-specific lipid-transfer protein 4 OS=Oryza sat... [more]
NLTP1_TOBAC4.635e-1340.91Non-specific lipid-transfer protein 1 OS=Nicotiana... [more]
NLTP1_SORBI6.054e-1337.78Non-specific lipid-transfer protein 1 OS=Sorghum b... [more]
NLTP1_ARATH6.054e-1341.11Non-specific lipid-transfer protein 1 OS=Arabidops... [more]
NLTP3_PRUDU7.906e-1337.78Non-specific lipid-transfer protein 3 OS=Prunus du... [more]
NLTP2_SOLLC1.033e-1239.77Non-specific lipid-transfer protein 2 OS=Solanum l... [more]

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Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
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