CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP3_HORVU (Non-specific lipid-transfer protein 3 OS=Hordeum vulgare GN=LTP3 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.349e-12
Identity = 34/90 (37.78%), Postives = 52/90 (57.78%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP-ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV+  L+PCISY    GA  P ACC G+  L  A+++T D+   C C+K  A  I G+N  +V+ +P  C    P+ ++   +C+KV+
Sbjct:   29 CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACRCLKSLATSIKGINMGKVSGVPGKCGVSVPFPISMSTDCNKVH 118          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_BETVU (Non-specific lipid-transfer protein OS=Beta vulgaris GN=IWF1' PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.300e-12
Identity = 35/91 (38.46%), Postives = 51/91 (56.04%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP--ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C  V   L PCI Y  ++GA  P  ACC GI +LN+A+ +  DR T C C+K  A  I G+NY +  +LP  C    PY ++ +  C+ ++
Sbjct:   29 CGLVASKLAPCIGY--LQGAPGPSAACCGGIKSLNSAAASPADRKTACTCLKSAATSIKGINYGKAASLPRQCGVSVPYAISPNTNCNAIH 117          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 35/88 (39.77%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV   LT C+ Y    G + P CC G+  LN  +KTT DR T CNC+K       GLN   V  +P  C    PY +    +C+KV
Sbjct:   25 CGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVNPSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKV 112          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLT43_HORVU (Non-specific lipid-transfer protein 4.3 OS=Hordeum vulgare GN=LTP4.3 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP-ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L+PCISY    GA  P ACC G+  L  A+++T D+   C C+K  A    GLN  +   +P +C    PY ++  ++CSK+
Sbjct:   29 CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKI 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLT42_HORVU (Non-specific lipid-transfer protein 4.2 OS=Hordeum vulgare GN=LTP4.2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQP-ACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L+PCISY    GA  P ACC G+  L  A+++T D+   C C+K  A    GLN  +   +P +C    PY ++  ++CSK+
Sbjct:   29 CGQVSSALSPCISYARGNGAKPPVACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKI 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLT41_HORVU (Non-specific lipid-transfer protein 4.1 OS=Hordeum vulgare GN=LTP4.1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.004e-12
Identity = 34/89 (38.20%), Postives = 50/89 (56.18%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPA-CCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV+  L+PCISY    GA  PA CC G+  L  A+++T D+   C C+K  A    GLN  +   +P +C    PY ++  ++CSK+
Sbjct:   29 CGQVSSALSPCISYARGNGAKPPAACCSGVKRLAGAAQSTADKQAACKCIKSAAG---GLNAGKAAGIPSMCGVSVPYAISASVDCSKI 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_PHAAU (Non-specific lipid-transfer protein 1 OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.924e-12
Identity = 31/89 (34.83%), Postives = 47/89 (52.81%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV   L  CI +    G V P+CC G+  +  +S+TT DR  +C+C+K  A  + G+N +    LP  C    PYK++    C+ +N
Sbjct:    3 CGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPYKISTSTNCNSIN 91          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP5_VITSX (Non-specific lipid-transfer protein P5 OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 32/89 (35.96%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C  V   L PCI+Y    G +  ACC+G+  L  ++ TT+DR T C C+   +  I G+N+     LP  C    PYK++    C +VN
Sbjct:    3 CGDVATQLAPCINYLRSAGPLPVACCNGVKNLKNSAATTQDRRTACKCLINASKSISGVNFGLAAGLPGKCGVNIPYKISPSTNCDQVN 91          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP4_LENCU (Non-specific lipid-transfer protein 4 (Fragment) OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  VT  L+PC++Y        P CC G+  L AA+ TT DR   CNC+K  A  I  LN +    LP  C    PYK++    C+ V
Sbjct:   21 CGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTV 108          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_LENCU (Non-specific lipid-transfer protein 1 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.125e-12
Identity = 33/88 (37.50%), Postives = 45/88 (51.14%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V+  L PC++Y        P CC G+  LN A++TT DR   CNC+K  A  I GL    V TLP  C  + PY ++    C+ +
Sbjct:   29 CGTVSGALVPCLTYLKGGPGPSPQCCGGVKRLNGAARTTIDRRAACNCLKSSAGSISGLKPGNVATLPGKCGVRLPYTISTSTNCNTI 116          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP3_HORVU1.349e-1237.78Non-specific lipid-transfer protein 3 OS=Hordeum v... [more]
NLTP_BETVU2.300e-1238.46Non-specific lipid-transfer protein OS=Beta vulgar... [more]
SCA_LILLO3.004e-1239.77Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLT43_HORVU3.004e-1238.20Non-specific lipid-transfer protein 4.3 OS=Hordeum... [more]
NLT42_HORVU3.004e-1238.20Non-specific lipid-transfer protein 4.2 OS=Hordeum... [more]
NLT41_HORVU3.004e-1238.20Non-specific lipid-transfer protein 4.1 OS=Hordeum... [more]
NLTP1_PHAAU3.924e-1234.83Non-specific lipid-transfer protein 1 OS=Phaseolus... [more]
NLTP5_VITSX5.125e-1235.96Non-specific lipid-transfer protein P5 OS=Vitis sp... [more]
NLTP4_LENCU5.125e-1238.64Non-specific lipid-transfer protein 4 (Fragment) O... [more]
NLTP1_LENCU5.125e-1237.50Non-specific lipid-transfer protein 1 OS=Lens culi... [more]

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Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
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