CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  VT  L+PC++Y        P CC G+  L AA+ TT DR   CNC+K  A  I  LN +    LP  C    PYK++    C+ V
Sbjct:   29 CGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVDIPYKISTSTNCNTV 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP5_LENCU (Non-specific lipid-transfer protein 5 OS=Lens culinaris PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 34/88 (38.64%), Postives = 45/88 (51.14%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  VT  L+PC++Y        P CC G+  L AA+ TT DR   CNC+K  A+ I  LN +    LP  C    PYK++    C+ V
Sbjct:   28 CGAVTGDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCMKSAASSITKLNTNNAAALPGKCGVNIPYKISTSTNCNTV 115          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 33/88 (37.50%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V+  L  CI Y    G V  ACC G+T+LN  ++TT DR   C C+   A  +P +N  R   LP  C    PYK++    C+ V
Sbjct:   29 CGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSV 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLCI (Non-specific lipid-transfer protein 2 OS=Solanum chilense PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 33/88 (37.50%), Postives = 47/88 (53.41%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC+ Y + RG +   CC G+  L   ++TT DR   C C+K  A+    L+  +  +LP  C    PYK++   +CSKV
Sbjct:   27 CGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQAACACLKSAASSFTDLDLGKAASLPSTCNVNIPYKISPSTDCSKV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_LENCU (Non-specific lipid-transfer protein 2 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 6.693e-12
Identity = 34/88 (38.64%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  VT  L+PC++Y        P CC G+  L AA+ TT DR   CNC+K  A  I  LN +    LP  C    PYK++    C+ V
Sbjct:   29 CGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIPYKISTTTNCNTV 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_TOBAC (Non-specific lipid-transfer protein 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 34/88 (38.64%), Postives = 47/88 (53.41%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV   L PC+ Y   RG +  +CC G+  L  A+K+  DR T C C+K  A  I G++  +   LP  C    PYK++   +CSKV
Sbjct:   27 CGQVQSGLAPCLPYLQGRGPLG-SCCGGVKGLLGAAKSLSDRKTACTCLKSAANAIKGIDMGKAAGLPGACGVNIPYKISPSTDCSKV 113          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP2_BRANA (Non-specific lipid-transfer protein 2 OS=Brassica napus GN=LTP2 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.742e-12
Identity = 32/88 (36.36%), Postives = 43/88 (48.86%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V+ ++ PCI Y    G +   CC G+T LN  ++TT DR   C C+   A   P LN  R   LP  C    PYK++    C+ V
Sbjct:   29 CGTVSGYVAPCIGYLTQNGPLPRGCCTGVTNLNNMARTTPDRQQACRCLVGAANSFPTLNAARAAGLPKACGVNIPYKISKSTNCNSV 116          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTPD_BRAOT (Non-specific lipid-transfer protein D OS=Brassica oleracea var. italica GN=WAX9D PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 33/89 (37.08%), Postives = 46/89 (51.69%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRG-AVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V+ ++ PCI Y      AV  ACC G+T+LN  ++TT DR   C C+   A  +P +N  R   LP  C    PYK++    C+ V
Sbjct:   29 CGTVSGYVAPCIGYLAQNAPAVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANALPTINVARAAGLPKACGVNIPYKISKTTNCNSV 117          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP3_ARATH (Non-specific lipid-transfer protein 3 OS=Arabidopsis thaliana GN=LTP3 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.142e-11
Identity = 32/88 (36.36%), Postives = 44/88 (50.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C  V   L PC +Y    G V P+CC G+  LN+ +KTT DR   C C++  A  I GLN    + LP  C    PY ++    C+ +
Sbjct:   27 CGTVAGSLAPCATYLSKGGLVPPSCCAGVKTLNSMAKTTPDRQQACRCIQSTAKSISGLNPSLASGLPGKCGVSIPYPISMSTNCNNI 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTPB_ARATH (Non-specific lipid-transfer protein 11 OS=Arabidopsis thaliana GN=LTP11 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.947e-11
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKVN 390
            C QV ++L  C+ Y    G   P CC+G+ +L AA+    DR   CNC+K  A  IPG+N D    LP  C        +  ++C+ +N
Sbjct:   31 CPQVNMYLAQCLPYLKAGGNPSPMCCNGLNSLKAAAPEKADRQVACNCLKSVANTIPGINDDFAKQLPAKCGVNIGVPFSKTVDCNSIN 119          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP6_LENCU6.693e-1238.64Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP5_LENCU6.693e-1238.64Non-specific lipid-transfer protein 5 OS=Lens culi... [more]
NLTP3_BRANA6.693e-1237.50Non-specific lipid-transfer protein 3 OS=Brassica ... [more]
NLTP2_SOLCI6.693e-1237.50Non-specific lipid-transfer protein 2 OS=Solanum c... [more]
NLTP2_LENCU6.693e-1238.64Non-specific lipid-transfer protein 2 OS=Lens culi... [more]
NLTP2_TOBAC8.742e-1238.64Non-specific lipid-transfer protein 2 OS=Nicotiana... [more]
NLTP2_BRANA8.742e-1236.36Non-specific lipid-transfer protein 2 OS=Brassica ... [more]
NLTPD_BRAOT1.142e-1137.08Non-specific lipid-transfer protein D OS=Brassica ... [more]
NLTP3_ARATH1.142e-1136.36Non-specific lipid-transfer protein 3 OS=Arabidops... [more]
NLTPB_ARATH1.947e-1134.83Non-specific lipid-transfer protein 11 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
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