CX306067

Overview
NameCX306067
Unique NameCX306067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length397
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig492 contig Ccv1_Contig492:77..473. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1
Query:  124 CEQVTIWLTPCISY--GVMRGAVQPACCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QVT  L PC+ Y    +   V   CC+ +  LN A++TT D+ T C C+K+ A  + GLN +    LP  C    PYK++   +C++V
Sbjct:   30 CGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP_CICAR (Non-specific lipid-transfer protein OS=Cicer arietinum PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.666e-11
Identity = 33/90 (36.67%), Postives = 47/90 (52.22%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPA--CCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C +V   L PC+ Y  ++G   P+  CC G+  LN+A+ TT DR   CNC+K  A  I  LN +    LP  C    PYK++    C+ +
Sbjct:   27 CGRVDTALAPCLGY--LQGGPGPSAQCCGGVRNLNSAAVTTPDRQAACNCLKSAAGSISRLNANNAAALPGKCVVNIPYKISTSTNCATI 114          
BLAST of CX306067 vs. ExPASy Swiss-Prot
Match: NLTP1_HORVU (Non-specific lipid-transfer protein 1 OS=Hordeum vulgare GN=LTP1 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.665e-11
Identity = 30/90 (33.33%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  124 CEQVTIWLTPCISYGVMRGAVQPA--CCDGITALNAASKTTEDRTTLCNCVKEGAARIPGLNYDRVNTLPDICRSKCPYKLTHDLECSKV 387
            C QV   + PC++Y  ++G   P+  CC+G+  L+  ++++ DR T+CNC+K  A  I  LN +   ++P  C    PY ++ D++CS++
Sbjct:   29 CGQVDSKMKPCLTY--VQGGPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNNAASIPSKCNVNVPYTISPDIDCSRI 116          
The following BLAST results are available for this feature:
BLAST of CX306067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
NLTP_DAUCA5.666e-1136.67Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP_CICAR5.666e-1136.67Non-specific lipid-transfer protein OS=Cicer ariet... [more]
NLTP1_HORVU9.665e-1133.33Non-specific lipid-transfer protein 1 OS=Hordeum v... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18013E12Rv Drought1 Citrus clementina cDNA clone C18013E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306067 ID=CX306067; Name=CX306067; organism=Citrus clementina; type=EST; length=397bp
GCGGGGATTGCATAAACCATAATTACAATGGCTGCTCAATTTCCAAAGGT
GCCATTAACAATGTCTATTGCAACAATGTTGTTGTTATTGTTGGCTCCCC
TGAATGCAGCAACAACAATAACATGCGAGCAAGTGACAATCTGGCTGACA
CCATGCATCAGCTATGGCGTAATGCGTGGGGCTGTTCAACCAGCTTGTTG
TGATGGCATTACAGCTTTGAATGCTGCTTCTAAAACCACAGAAGATAGAA
CGACCCTATGTAATTGTGTGAAGGAAGGTGCTGCTAGGATCCCTGGTCTC
AACTATGATCGTGTTAATACGCTTCCTGATATTTGCCGGAGTAAATGTCC
TTATAAACTTACACATGATCTTGAATGCTCTAAGGTGAACTAAATCT
back to top