CX306080

Overview
NameCX306080
Unique NameCX306080
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length288
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.138e-11
Identity = 28/41 (68.29%), Postives = 30/41 (73.17%), Query Frame = 2 
Query:  158 IGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGPIGQ 280
            I WDL  AS F  TWDA+KPL+WR KYGWTAFC   GP GQ
Sbjct:    3 INWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQ 43
[Close]
BLAST of CX306080 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.325e-11
Identity = 31/64 (48.44%), Postives = 36/64 (56.25%), Query Frame = 2 
Query:  116 YCGRTP------------YQHYHPVQIGWDLTAASAFLPTWDANKPLAWRQKYGWTAFCHSGGP 271
            YCG T             Y +Y+P Q  WDL A SA+  TWDA+KP +WR  YGWTAFC   GP
Sbjct:   18 YCGTTADYCSPDNNCQATYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP 79
The following BLAST results are available for this feature:
BLAST of CX306080 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
PR4_PRUPE1.138e-1168.29Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
CHAL_BRARA4.325e-1148.44Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]

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Properties
Property NameValue
Genbank descriptionC18013G02Rv Drought1 Citrus clementina cDNA clone C18013G02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306080 ID=CX306080; Name=CX306080; organism=Citrus clementina; type=EST; length=288bp
GTAACCAGCTAGCGGTATTATTATTCTAAATAACGGACCAAGCTAGCTGC
TCTTTAATCTCTAGGATTAAAATTATGAATAAGTACCCTGTGATCCTTTC
TGGGTTAATAAATTCTACTGTGGGAGAACACCTTATCAACACTACCACCC
TGTGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTTGCCAACAT
GGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTGCT
TTCTGTCATTCGGGCGGACCCATTGGACAAACTGCTTG
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