CX306081

Overview
NameCX306081
Unique NameCX306081
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length344
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9835 contig Ccv1_Contig9835:1..341. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: PR4_PRUPE (Pathogenesis-related protein PR-4 (Fragment) OS=Prunus persica PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.077e-21
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  154 EQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            + I WDL  AS FCATWDA+KPL+WR KYGWTAFC   GP GQ +CG+CL VTN+GTGA+  V
Sbjct:    1 QNINWDLRTASVFCATWDADKPLSWRSKYGWTAFCGPVGPTGQDSCGKCLLVTNTGTGAKVTV 63          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: CHAL_BRARA (Chitin-binding allergen Bra r 2 (Fragments) OS=Brassica rapa PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.794e-15
Identity = 37/68 (54.41%), Postives = 44/68 (64.71%), Query Frame = 1
Query:  121 NVRATYHLYHPEQIGWDLTAASAFCATWDANKPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGT 324
            N +ATYH Y+P Q  WDL A SA+C+TWDA+KP +WR  YGWTAFC   GP       RCLR   + T
Sbjct:   31 NCQATYHYYNPAQNNWDLRAVSAYCSTWDADKPYSWR--YGWTAFCGPAGP-------RCLRTNAAVT 89          
BLAST of CX306081 vs. ExPASy Swiss-Prot
Match: WIN_SOYBN (Wound-induced protein (Fragment) OS=Glycine max GN=WIN PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.006e-12
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1
Query:  214 KPLAWRQKYGWTAFCHSGGPIGQTACGRCLRVTNSGTGAQQIV 342
            KP +WR KYGWTAFC   GP G+ +CG+CLRVTN+GTGA  IV
Sbjct:    1 KPYSWRSKYGWTAFCGPVGPRGRDSCGKCLRVTNTGTGANTIV 43          
The following BLAST results are available for this feature:
BLAST of CX306081 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PR4_PRUPE2.077e-2166.67Pathogenesis-related protein PR-4 (Fragment) OS=Pr... [more]
CHAL_BRARA3.794e-1554.41Chitin-binding allergen Bra r 2 (Fragments) OS=Bra... [more]
WIN_SOYBN3.006e-1267.44Wound-induced protein (Fragment) OS=Glycine max GN... [more]

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Properties
Property NameValue
Genbank descriptionC18013G03Rv Drought1 Citrus clementina cDNA clone C18013G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306081 ID=CX306081; Name=CX306081; organism=Citrus clementina; type=EST; length=344bp
GCGGGGGCAACGGATAAGTTAAGCTTAGAACATTAAGAGAAAAATATGGG
GAGGTTCGGTCTCTGTGTGATTCTGCCAGTTTGTCTACTGGTGGCAGCTG
CTTCTGCCCAAAGTGCTTCTAATGTGAGAGCCACGTATCATCTCTACCAC
CCTGAGCAAATTGGATGGGACTTGACGGCAGCGAGCGCTTTCTGCGCAAC
ATGGGATGCCAACAAGCCCTTGGCCTGGCGCCAGAAATATGGCTGGACTG
CTTTCTGTCATTCGGGCGGACCCATTGGACAAACTGCTTGTGGCAGGTGC
TTAAGGGTCACAAACAGTGGTACAGGAGCCCAACAAATTGTGAG
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