CX306158

Overview
NameCX306158
Unique NameCX306158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM2_DIACA (S-adenosylmethionine decarboxylase proenzyme 2 OS=Dianthus caryophyllus GN=SAMDC2 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 2.376e-33
Identity = 66/93 (70.97%), Postives = 82/93 (88.17%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLL 296
            EMCMTGLD+++ASVF+K+  +SAA+MTE SGIRKILP S ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVG ++ + D+  L+
Sbjct:  195 EMCMTGLDKEKASVFFKSQSASAAVMTESSGIRKILPDSVICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLQVVDLNLLV 287          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM1_BRAJU (S-adenosylmethionine decarboxylase proenzyme 1 OS=Brassica juncea GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 3.103e-33
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCM+GLD+ +ASVF+K   SSA  MT++SGIRKILP+S+ICDFEF+PCGYSMNS+EGDA STIHVTPEDGFSYASFEAVG
Sbjct:  183 EMCMSGLDKDKASVFFKNESSSAGSMTDNSGIRKILPQSQICDFEFEPCGYSMNSVEGDASSTIHVTPEDGFSYASFEAVG 263          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_IPOBA (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea batatas GN=SAMDC PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 5.293e-33
Identity = 64/81 (79.01%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP SEICDF+F+PCGYSMN++EG A+S IHVTPEDGFSYASFEA+G
Sbjct:  183 EMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSEICDFDFEPCGYSMNAVEGGAISPIHVTPEDGFSYASFEAMG 263          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_IPONI (S-adenosylmethionine decarboxylase proenzyme OS=Ipomoea nil GN=SAMDC PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 63/81 (77.78%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLD+K ASVF+KT  SSAA+MT+ SGIRKILP S+ICDF+F+PCGYSMN++EG  +STIHVTPEDGFSYASFEA+G
Sbjct:  183 EMCMTGLDKKSASVFFKTQSSSAAVMTDASGIRKILPGSDICDFDFEPCGYSMNAVEGGTISTIHVTPEDGFSYASFEAMG 263          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM1_DIACA (S-adenosylmethionine decarboxylase proenzyme 1 OS=Dianthus caryophyllus GN=SAMDC1 PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.913e-33
Identity = 66/93 (70.97%), Postives = 81/93 (87.10%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLL 296
            EMCMTGLD+ +ASVF+K+  +SAA+MTE SGIRKILP S ICDF+F+PCGYSMN+IEG AVSTIH+TPEDGFSYASFEAVG ++ + D+  L+
Sbjct:  204 EMCMTGLDKGKASVFFKSESASAAVMTETSGIRKILPDSAICDFDFEPCGYSMNAIEGPAVSTIHITPEDGFSYASFEAVGYDLKIVDVNQLV 296          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM3_BRAJU (S-adenosylmethionine decarboxylase proenzyme 3 OS=Brassica juncea GN=SAMDC3 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.028e-33
Identity = 69/96 (71.88%), Postives = 83/96 (86.46%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSA--AMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG-NISLRDIQFLLT 299
            EMCMTGLD+++ASVFYK NE+      MT++SGIRKILPKS+ICDFEF+PCGYSMNS+EGDA+STIHVTPEDGFSYASFEAVG + +  D+  L+T
Sbjct:  182 EMCMTGLDKEKASVFYK-NETGGENGSMTDNSGIRKILPKSQICDFEFEPCGYSMNSVEGDAISTIHVTPEDGFSYASFEAVGYDFNTLDLSQLVT 276          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_DAUCA (S-adenosylmethionine decarboxylase proenzyme OS=Daucus carota GN=SAMDC PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.011e-32
Identity = 64/92 (69.57%), Postives = 78/92 (84.78%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG----NISLRDI 284
            EMCMT L+R +ASVFYKTN SSA  +T++SG+R ILP S ICDFEFDPCGYSMN++EG AVSTIH+TPEDGFSY+SFEAVG    +++L D+
Sbjct:  183 EMCMTSLNRDKASVFYKTNSSSATSVTDNSGLRDILPNSRICDFEFDPCGYSMNAVEGPAVSTIHITPEDGFSYSSFEAVGYDPKSVNLSDL 274          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_VICFA (S-adenosylmethionine decarboxylase proenzyme OS=Vicia faba GN=SAMDC PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 3.431e-32
Identity = 63/81 (77.78%), Postives = 71/81 (87.65%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVF+K    SAA MT +SGIRKILP SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  G
Sbjct:  181 EMCMTGLDREKASVFFKQQTGSAAEMTVNSGIRKILPNSEICDFDFEPCGYSMNSVEGPAVSTIHITPEDGFSYASFETAG 261          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_SPIOL (S-adenosylmethionine decarboxylase proenzyme OS=Spinacia oleracea GN=SAMDC PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.852e-32
Identity = 61/81 (75.31%), Postives = 74/81 (91.36%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGL +++ASVF+K+   +AA+MTE SGIRKILP S+ICDF+F+PCGYSMN+IEG A+STIH+TPEDGFSYASFEAVG
Sbjct:  181 EMCMTGLKKEKASVFFKSQSPNAAVMTESSGIRKILPDSKICDFDFEPCGYSMNAIEGPAISTIHITPEDGFSYASFEAVG 261          
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_PEA (S-adenosylmethionine decarboxylase proenzyme OS=Pisum sativum GN=SAMDC PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.904e-31
Identity = 62/81 (76.54%), Postives = 70/81 (86.42%), Query Frame = 3
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVSTIHVTPEDGFSYASFEAVG 263
            EMCMTGLDR++ASVF+K    SAA MT +SGIRKIL  SEICDF+F+PCGYSMNS+EG AVSTIH+TPEDGFSYASFE  G
Sbjct:  181 EMCMTGLDREKASVFFKEQTGSAAEMTVNSGIRKILRNSEICDFDFEPCGYSMNSVEGSAVSTIHITPEDGFSYASFETAG 261          
The following BLAST results are available for this feature:
BLAST of CX306158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DCAM2_DIACA2.376e-3370.97S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_BRAJU3.103e-3379.01S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_IPOBA5.293e-3379.01S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM_IPONI6.913e-3377.78S-adenosylmethionine decarboxylase proenzyme OS=Ip... [more]
DCAM1_DIACA6.913e-3370.97S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM3_BRAJU9.028e-3371.88S-adenosylmethionine decarboxylase proenzyme 3 OS=... [more]
DCAM_DAUCA2.011e-3269.57S-adenosylmethionine decarboxylase proenzyme OS=Da... [more]
DCAM_VICFA3.431e-3277.78S-adenosylmethionine decarboxylase proenzyme OS=Vi... [more]
DCAM_SPIOL5.852e-3275.31S-adenosylmethionine decarboxylase proenzyme OS=Sp... [more]
DCAM_PEA2.904e-3176.54S-adenosylmethionine decarboxylase proenzyme OS=Pi... [more]

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Properties
Property NameValue
Genbank descriptionC18014F12Rv Drought1 Citrus clementina cDNA clone C18014F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306158 ID=CX306158; Name=CX306158; organism=Citrus clementina; type=EST; length=368bp
CGCCCGGGCAGGTACGCGGGGAGATGTGCATGACTGGTTTGGACAGAAAG
AGGGCATCTGTCTTCTACAAAACTAATGAAAGCTCAGCCGCTATGATGAC
CGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATTTGTGATT
TTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGGGGATGCA
GTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATGCAAGTTT
TGAGGCCGTGGGTAATATAAGCCTGAGAGATATTCAGTTCCTTTTAACTA
CACCGGAGATCTATCACGATTATAGATCTATCACTGCTAAGAACTTCCTG
ACAGCAGTTCGAAAGTAC
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