CX306158

Overview
NameCX306158
Unique NameCX306158
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length368
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig873 contig Ccv1_Contig873:1..368. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
[Close]
BLAST of CX306158 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.360e-11
Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 3 
Query:   21 EMCMTGLDRKRASVFYKTNESSAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDAVS-TIHVTPEDGFSYASFE 254
            E+ M+ LD      FY  +  +A  +T +SGIR ++P S I    F+PCGYSMN ++ D    TIH+TPE  FSY SFE
Sbjct:  178 EILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATLFNPCGYSMNGMKSDGTYWTIHITPEPEFSYVSFE 256
The following BLAST results are available for this feature:
BLAST of CX306158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
DCAM_MESAU4.360e-1145.57S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM2_MUSSP4.360e-1145.57S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE4.360e-1145.57S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM1_MOUSE4.360e-1145.57S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC18014F12Rv Drought1 Citrus clementina cDNA clone C18014F12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306158 ID=CX306158; Name=CX306158; organism=Citrus clementina; type=EST; length=368bp
CGCCCGGGCAGGTACGCGGGGAGATGTGCATGACTGGTTTGGACAGAAAG
AGGGCATCTGTCTTCTACAAAACTAATGAAAGCTCAGCCGCTATGATGAC
CGAGGACTCTGGCATCAGAAAGATTCTTCCAAAATCTGAGATTTGTGATT
TTGAGTTTGACCCTTGTGGTTACTCCATGAATAGTATTGAAGGGGATGCA
GTATCTACTATCCACGTCACACCTGAAGATGGTTTCAGTTATGCAAGTTT
TGAGGCCGTGGGTAATATAAGCCTGAGAGATATTCAGTTCCTTTTAACTA
CACCGGAGATCTATCACGATTATAGATCTATCACTGCTAAGAACTTCCTG
ACAGCAGTTCGAAAGTAC
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