CX306165

Overview
NameCX306165
Unique NameCX306165
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length552
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306165 vs. ExPASy Swiss-Prot
Match: CAMT2_DICDI (Probable caffeoyl-CoA O-methyltransferase 2 OS=Dictyostelium discoideum GN=omt6 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.192e-16
Identity = 48/121 (39.67%), Postives = 74/121 (61.16%), Query Frame = -1
Query:  175 KAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLDELILGWRDSVQELNKALAVDPRIEICQLSIADGVTLCRRI 537
            KAGV HKI+ +  PA   L +LI D+    T+DFVF+DADK  Y  Y++  ++L++ GG+I  DN L  G  VA P+A+++  ++    +++ LN  +  D R+    L IADG+TL  +I
Sbjct:  116 KAGVDHKINLKIQPASKTLQELI-DQGEENTYDFVFIDADKTGYDTYYELSLKLIRKGGIIAIDNVLQHGR-VADPNANVEPNLV----AIRALNDKILADKRVTKSLLPIADGITLITKI 230          
BLAST of CX306165 vs. ExPASy Swiss-Prot
Match: CMTD1_HUMAN (Catechol-O-methyltransferase domain-containing protein 1 OS=Homo sapiens GN=COMTD1 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.863e-15
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = -1
Query:  175 PIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLDELILGWRDSVQELNKALAVDPRIEICQLSIADGVTLCRRI 549
            P+ ++A   HKID R  PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GG++     LW G V+  P  D+        + V+ LN+ +  D R+ I  L + DG+TL  +I
Sbjct:  145 PLWRQAEAEHKIDLRLKPALETLDELLAAGEA-GTFDVAVVDADKENCSAYYERCLQLLRPGGILAVLRVLWRGKVLQPPKGDVA------AECVRNLNERIRRDVRVYISLLPLGDGLTLAFKI 262          
BLAST of CX306165 vs. ExPASy Swiss-Prot
Match: CMTD1_MOUSE (Catechol-O-methyltransferase domain-containing protein 1 OS=Mus musculus GN=Comtd1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.141e-12
Identity = 46/125 (36.80%), Postives = 70/125 (56.00%), Query Frame = -1
Query:  175 PIIQKAGVAHKIDFREGPALPLLDQLIQDEKYHGTFDFVFVDADKNNYINYHKRLIELVKVGGVIGYDNTLWGGSVVAQPDADLDELILGWRDSVQELNKALAVDPRIEICQLSIADGVTLCRRI 549
            P+ ++A V  KID R  PAL  LD+L+   +  GTFD   VDADK N   Y++R ++L++ GGV+     LW G V+ QP      +     + V+ LN+ +  D R+ I  L + DG++L  +I
Sbjct:  145 PMWKQAEVEQKIDLRLQPALQTLDELLAAGEA-GTFDIAVVDADKENCTAYYERCLQLLRPGGVLAVLRVLWRGEVL-QPQPRNKTV-----ECVRNLNERILRDARVYISLLPLDDGLSLAFKI 262          
The following BLAST results are available for this feature:
BLAST of CX306165 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
CAMT2_DICDI3.192e-1639.67Probable caffeoyl-CoA O-methyltransferase 2 OS=Dic... [more]
CMTD1_HUMAN7.863e-1536.80Catechol-O-methyltransferase domain-containing pro... [more]
CMTD1_MOUSE2.141e-1236.80Catechol-O-methyltransferase domain-containing pro... [more]

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Properties
Property NameValue
Genbank descriptionC18014G07Rv Drought1 Citrus clementina cDNA clone C18014G07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306165 ID=CX306165; Name=CX306165; organism=Citrus clementina; type=EST; length=552bp
TTTTTTTTTTTTTTTTTTTTTAAAAATTTATTAACTTAAGAAAAACAATA
ATACATTTCTCCAAACACTCATCGGTCTAATTTATTTGTGGATTTTACTG
TCATAACCACACATAGTATAGTTTAAAAGTTACGACACAACCAGTCTCGT
GAGTGAAAATTGAGAGGATCAGCCAATGCGACGACATAATGTAACCCCAT
CAGCAATGGAGAGCTGGCAAATCTCAATCCTTGGATCAACGGCCAGGGCC
TTGTTGAGTTCCTGCACAGAATCCCTCCAGCCTAAGATTAGCTCATCCAG
GTCGGCATCAGGTTGTGCCACCACAGATCCACCCCACAAGGTGTTGTCGT
AGCCAATCACTCCCCCAACCTTCACAAGCTCAATAAGCCTCTTGTGGTAA
TTAATGTAGTTATTCTTGTCAGCATCAACAAAGACGAAGTCGAATGTCCC
ATGATATTTTTCGTCTTGGATCAATTGATCAAGAAGAGGAAGAGCAGGGC
CTTCTCTGAAATCAATCTTGTGGGCAACACCAGCTTTTTGAATTATAGGG
AG
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