CX306167

Overview
NameCX306167
Unique NameCX306167
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15394 contig Ccv1_Contig15394:598..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_HUMAN (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_BOVIN (40S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.181e-16
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP GK GP  PLPD V+I  PKDE
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPTGKIGPKKPLPDHVSIVEPKDE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_ICTPU (40S ribosomal protein S3 OS=Ictalurus punctatus GN=rps3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.087e-16
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = -3
Query:  339 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE 494
            N Y+D+AVRHVLLRQGVLGIKVKIML WDP+GK GP  PLPD V+I  PK+E
Sbjct:  165 NYYVDTAVRHVLLRQGVLGIKVKIMLPWDPSGKIGPKKPLPDHVSIVEPKEE 216          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_MANSE (40S ribosomal protein S3 OS=Manduca sexta GN=RpS3 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.594e-15
Identity = 36/59 (61.02%), Postives = 44/59 (74.58%), Query Frame = -3
Query:  318 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPT 494
            N+Y+++A RHVLLRQGVLGIKVKIML WD  GK GP  P PD + +  PKDE   ++PT
Sbjct:  166 NDYVNTATRHVLLRQGVLGIKVKIMLPWDQQGKNGPKKPQPDHILVTEPKDEPAPLEPT 224          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_DROME (40S ribosomal protein S3 OS=Drosophila melanogaster GN=RpS3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.337e-14
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = -3
Query:  291 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDEEEYVKPTLVATDIEVP 494
            N+Y+++A RHVLLRQGVLGIKVK+ML +DP  K GP  PLPD V++  PK+E+ Y  P    T+ ++P
Sbjct:  167 NDYVETATRHVLLRQGVLGIKVKVMLPYDPKNKIGPKKPLPDNVSVVEPKEEKIYETP---ETEYKIP 231          
BLAST of CX306167 vs. ExPASy Swiss-Prot
Match: RS3_CAEEL (40S ribosomal protein S3 OS=Caenorhabditis elegans GN=rps-3 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.640e-12
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = -3
Query:  291 NEYIDSAVRHVLLRQGVLGIKVKIMLSWDPNGKQGPTTPLPDLVTIHSPKDE----EEYVKPTLVATDIEVP 494
            N+YI  AVRHV LRQGV+GIKVKIML +DP G+ GP   LPD V I  P++E    E + +      D++VP
Sbjct:  167 NDYIQQAVRHVQLRQGVIGIKVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQHKEEKKDVQVP 238          
The following BLAST results are available for this feature:
BLAST of CX306167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RS3_HUMAN3.181e-1676.9240S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
RS3_BOVIN3.181e-1676.9240S ribosomal protein S3 OS=Bos taurus GN=RPS3 PE=... [more]
RS3_ICTPU7.087e-1675.0040S ribosomal protein S3 OS=Ictalurus punctatus GN... [more]
RS3_MANSE4.594e-1561.0240S ribosomal protein S3 OS=Manduca sexta GN=RpS3 ... [more]
RS3_DROME1.337e-1454.4140S ribosomal protein S3 OS=Drosophila melanogaste... [more]
RS3_CAEEL3.640e-1251.3940S ribosomal protein S3 OS=Caenorhabditis elegans... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18014G09Rv Drought1 Citrus clementina cDNA clone C18014G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306167 ID=CX306167; Name=CX306167; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTGGAAACAAGAGCCATATTGCAGT
TACAGCTCAAGCAAATAGAATACAAAAAAAACAATGTGCAACAGATTAAA
CAAGAAAATTGGTTGATAATTATGAAATCTTTAACAATACTGATGACTAC
AGTATATCAAAATTAACACCATGGAGTCTGAGGTATCCTTCATTAGCAAC
AAAAATGAAAACTAGAGCACTTCAAATACCACTGATAAAATATCAAAGAA
GATGAGACTATTCCCCACTTCGGCCTTAAGCCACTTGGATTGGGACCTCA
ATATCAGTAGCAACCAATGTTGGCTTGACATACTCCTCTTCATCCTTGGG
TGAGTGGATTGTTACCAGATCAGGTAGAGGGGTAGTAGGACCTTGCTTTC
CATTAGGATCCCAACTAAGCATGATCTTGACCTTAATACCAAGTACACCC
TGTCTCAAAAGAACATGTCTCACAGCAGAGTCAATATATTCATTCA
back to top