CX306168

Overview
NameCX306168
Unique NameCX306168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length542
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13527 contig Ccv1_Contig13527:23..564. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SYNY3 (Photosystem I reaction center subunit XI OS=Synechocystis sp. (strain PCC 6803) GN=psaL PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.185e-20
Identity = 46/110 (41.82%), Postives = 69/110 (62.73%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGL 534
            QV+Q  NGDPF+G L TPI+ S     ++ NLPAYR  +SP+LRG+EVG+AHG+ L+GP+   GPLR++E             +++ +  L+ YG+ +F +GE  +   L
Sbjct:    6 QVVQAYNGDPFVGHLSTPISDSAFTRTFIGNLPAYRKGLSPILRGLEVGMAHGYFLIGPWTLLGPLRDSEYQYIGGLIGALALILVATAALSSYGLVTF-QGEQGSGDTL 114          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_MICAN (Photosystem I reaction center subunit XI OS=Microcystis aeruginosa (strain NIES-843) GN=psaL PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.021e-20
Identity = 48/108 (44.44%), Postives = 66/108 (61.11%), Query Frame = 1
Query:  205 QVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAP 528
            QV+ P N DPFIG L TPI++S     ++ NLPAYR  ++P+LRG+EVG+AHG+ L GP+V  GPLR++E             V++ + CL  YG+ SF     S  P
Sbjct:    8 QVVTPYNDDPFIGHLATPISASGFTKAFIGNLPAYRPGLAPILRGLEVGMAHGYFLGGPWVVLGPLRDSEYANIGGLIPALAMVLLATGCLASYGLVSFQGKAASNDP 115          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_MASLA (Photosystem I reaction center subunit XI OS=Mastigocladus laminosus GN=psaL PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 50/113 (44.25%), Postives = 66/113 (58.41%), Query Frame = 1
Query:  148 SKRSPRFIVKAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            SK SP        S+    +V+ P   DP IG LETPI SSPL+ W++ NLPAYR  ++   RG+EVG+AHG+ + GPF K GPLRNT              ++IL+  LT+Y
Sbjct:    8 SKNSP--------SDPRNREVVFPAYRDPQIGDLETPINSSPLVKWFIGNLPAYRPGITTFRRGLEVGMAHGYWIFGPFAKLGPLRNTVNANLAGLLSALGLIIILTGALTLY 112          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_ANASP (Photosystem I reaction center subunit XI OS=Anabaena sp. (strain PCC 7120) GN=psaL PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.880e-20
Identity = 46/122 (37.70%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  175 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P+    +T+
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLALSLYA----NSNPPTALASVTV 126          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_ANAVT (Photosystem I reaction center subunit XI OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=psaL PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.003e-19
Identity = 46/122 (37.70%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  175 KAIQSEKPTYQVIQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEPSTAPGLTL 540
            K + S+    +V+ P   DP  G+LETP+ +SPL+ W+++NLPAYR  ++P  RG+EVG+AHG+ L GPF K GPLR+               VV+ ++ L++Y     N   P     +T+
Sbjct:    9 KNLPSDPRNREVVFPAGRDPQWGNLETPVNASPLVKWFINNLPAYRPGLTPFRRGLEVGMAHGYFLFGPFAKLGPLRDAANANLAGLLGAIGLVVLFTLSLSLYA----NSNPPKALASVTV 126          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SYNE7 (Photosystem I reaction center subunit XI OS=Synechococcus elongatus (strain PCC 7942) GN=psaL PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.387e-18
Identity = 45/90 (50.00%), Postives = 57/90 (63.33%), Query Frame = 1
Query:  226 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIA 495
            G P IG+L TPI SSP    +++ LP YR  +S   RG+E+G+AHGFLL GPF   GPLRNTE             VVIL++CL++YG A
Sbjct:   10 GTPEIGNLATPINSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPFSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYGNA 99          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_CYAA5 (Photosystem I reaction center subunit XI OS=Cyanothece sp. (strain ATCC 51142) GN=psaL PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.355e-16
Identity = 46/97 (47.42%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  226 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIASFNEGEP 516
            GDP IG+L TP+ SS L   ++ NLPAYR  +S   RG+EVG+AHG+ L GPF   GPLRNTE             + IL+I L++Y  AS   G+P
Sbjct:    8 GDPQIGNLATPVNSSRLSLAFIRNLPAYRRGLSANRRGLEVGMAHGYFLYGPFAILGPLRNTEYASTGGLLSAVAMISILTIALSLY--ASVEVGKP 102          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP6 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaL PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.312e-16
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 1
Query:  226 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYGIA 495
            G P IG L TP  SSP    +++ LP YR  +S   RG+E+G+AHGFLL GP    GPLRNTE             VVIL++CL++YG A
Sbjct:    9 GTPEIGDLATPTNSSPFTRTFINALPIYRRGLSSNRRGLEIGMAHGFLLYGPLSILGPLRNTETAGSAGLLATVGLVVILTVCLSLYGNA 98          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_PROM4 (Photosystem I reaction center subunit XI OS=Prochlorococcus marinus (strain MIT 9211) GN=psaL PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.556e-15
Identity = 39/92 (42.39%), Postives = 56/92 (60.87%), Query Frame = 1
Query:  211 IQPINGDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIY 486
            ++P++ DPF+G+LETP+ S      +++NLP YR+ +SP  RG+EVG A G+LL GPF   GPLRNT+             V IL+    +Y
Sbjct:   39 VKPVS-DPFVGNLETPVNSGYFTKAFINNLPFYRSGISPNFRGLEVGAAFGYLLYGPFAMTGPLRNTDFALTAGLLSTIGAVHILTALFVLY 129          
BLAST of CX306168 vs. ExPASy Swiss-Prot
Match: PSAL_SYNP2 (Photosystem I reaction center subunit XI OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=psaL PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.269e-14
Identity = 36/88 (40.91%), Postives = 53/88 (60.23%), Query Frame = 1
Query:  226 GDPFIGSLETPITSSPLIAWYLSNLPAYRTAVSPLLRGVEVGLAHGFLLVGPFVKAGPLRNTEIXXXXXXXXXXXXVVILSICLTIYG 489
            GDP +G+L TPI +S     +++NLP YR  +S   RG+EVG+AHG+ L GPF   GPLRN +             + +L++ L++YG
Sbjct:    8 GDPQVGNLATPINASAFSKAFINNLPGYRQGLSAQRRGLEVGMAHGYFLYGPFALLGPLRNADFAGVAGLLGTVGLISLLTLALSLYG 95          
The following BLAST results are available for this feature:
BLAST of CX306168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
PSAL_SYNY31.185e-2041.82Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_MICAN2.021e-2044.44Photosystem I reaction center subunit XI OS=Microc... [more]
PSAL_MASLA3.447e-2044.25Photosystem I reaction center subunit XI OS=Mastig... [more]
PSAL_ANASP5.880e-2037.70Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_ANAVT1.003e-1937.70Photosystem I reaction center subunit XI OS=Anabae... [more]
PSAL_SYNE79.387e-1850.00Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_CYAA51.355e-1647.42Photosystem I reaction center subunit XI OS=Cyanot... [more]
PSAL_SYNP62.312e-1647.78Photosystem I reaction center subunit XI OS=Synech... [more]
PSAL_PROM42.556e-1542.39Photosystem I reaction center subunit XI OS=Prochl... [more]
PSAL_SYNP21.269e-1440.91Photosystem I reaction center subunit XI OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionC18014G11Rv Drought1 Citrus clementina cDNA clone C18014G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306168 ID=CX306168; Name=CX306168; organism=Citrus clementina; type=EST; length=542bp
GCGGGGGTCTTTTAACAAACACAATCTCAAATGGCTTCTGTTTCTTCTCC
AATGGCCAGCCAGCTCAAAAGTAGCTTTACTTCACCAGTTTCCAGGAGCC
TGCTTACTCCAAGGGGTATCTCTGGATCTCCATTCAGGGTTGTTCCCTCC
AAGAGAAGCCCTCGTTTCATTGTCAAAGCTATCCAATCTGAAAAGCCAAC
TTACCAGGTTATTCAGCCAATCAATGGTGATCCATTCATTGGAAGCTTGG
AGACTCCAATTACATCAAGTCCATTGATTGCATGGTACCTCTCAAATCTA
CCAGCTTATCGGACGGCAGTCAGCCCACTACTGAGAGGAGTAGAGGTGGG
GTTGGCCCATGGATTCCTCCTTGTGGGTCCATTTGTTAAGGCAGGGCCAT
TGAGAAACACAGAAATAGCAGGACCAGCAGGGTCATTGGCAGCTGGTGGC
CTTGTTGTGATCCTCAGCATTTGCTTGACAATCTATGGAATTGCTTCATT
CAATGAAGGAGAGCCATCCACTGCTCCAGGCTTAACATTGAC
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