CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 53/59 (89.83%), Postives = 55/59 (93.22%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF+ DSRSSIFDAKAGIALS  FVKLV+WYDNEWGYS RVVDLIVHMAK
Sbjct:  279 GYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAK 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_CRAPL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Craterostigma plantagineum GN=GAPC PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 2.723e-24
Identity = 52/58 (89.66%), Postives = 57/58 (98.28%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            GYTE+DVVS+DFVGDSRSSIFDAKAGIALSKKFVK+V+WYDNEWGYS+RVVDLI HMA
Sbjct:  277 GYTEEDVVSSDFVGDSRSSIFDAKAGIALSKKFVKIVAWYDNEWGYSSRVVDLIRHMA 334          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_PEA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Pisum sativum GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF+GD+RSSIFDAKAGIAL+ KFVKLVSWYDNE GYSTRVVDLIVH+AK
Sbjct:  278 GYTEDDVVSTDFIGDTRSSIFDAKAGIALNDKFVKLVSWYDNELGYSTRVVDLIVHIAK 336          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.556e-24
Identity = 50/61 (81.97%), Postives = 58/61 (95.08%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTEDD+VSTDF+GD+RSSIFDAKAGI+L+  FVKLVSWYDNEWGYSTRVVDLI+H++K Q
Sbjct:  277 GYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHISKCQ 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 4.644e-24
Identity = 52/60 (86.67%), Postives = 56/60 (93.33%), Query Frame = -2
Query:  336 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 515
            GYTEDDVVSTDFVGD+RSSIFDAKAGI L+  FVKLVSWYDNEWGYS+RVVDLI HM+KT
Sbjct:  277 GYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMSKT 336          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.065e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GY E+D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HMAKTQ
Sbjct:  277 GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.065e-24
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GY E+D+VSTDFVGDSRSSIFDAKAGIAL+  FVKLV+WYDNEWGYS RV+DLI HMAKTQ
Sbjct:  277 GYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMAKTQ 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_PETCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petroselinum crispum GN=GAPC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.765e-23
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            GYTEDDVVSTDFVGDSRSSIFDAKAGIAL+  FVK+VSWYDNEWGYS RV+DLI HMA
Sbjct:  276 GYTEDDVVSTDFVGDSRSSIFDAKAGIALNGNFVKVVSWYDNEWGYSNRVIDLIRHMA 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 1 OS=Zea mays GN=GAPC1 PE=2 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 3.010e-23
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GY E+D+VSTDF+GDSRSSIFDAKAGIAL+  FVKLVSWYDNEWGYS RVVDLI HM KTQ
Sbjct:  277 GYVEEDLVSTDFLGDSRSSIFDAKAGIALNDHFVKLVSWYDNEWGYSNRVVDLIRHMFKTQ 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.931e-23
Identity = 51/61 (83.61%), Postives = 56/61 (91.80%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            G+TEDDVVSTDF+GD+RSSIFDAKAGIALSK FVKLVSWYDNE GYSTRVVDLI H+A  +
Sbjct:  277 GHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASVE 337          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3PC_PHYPA2.723e-2489.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_CRAPL2.723e-2489.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PEA3.556e-2489.83Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MESCR3.556e-2481.97Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU4.644e-2486.67Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_ORYSJ6.065e-2483.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI6.065e-2483.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETCR1.765e-2387.93Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAIZE3.010e-2383.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY3.931e-2383.61Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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