CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  282 YTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis elegans GN=gpd-2 PE=1 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.181e-17
Identity = 42/57 (73.68%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDFV D+ SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  282 YTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.379e-17
Identity = 38/59 (64.41%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED+VVSTDF G+  +SIFDAKAG++L+K FVKL++WYDNE GYS++V+DL+  ++K
Sbjct:  273 GYTEDEVVSTDFNGEELTSIFDAKAGLSLNKNFVKLIAWYDNETGYSSKVLDLVSLVSK 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P3_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis briggsae GN=gpd-3 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDFV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  282 YTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_CAEBR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caenorhabditis briggsae GN=gpd-2 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.225e-16
Identity = 41/57 (71.93%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDFV D+ SSIFDA A I L+  FVKL+SWYDNE+GYS RVVDLI ++A
Sbjct:  282 YTEDQVVSTDFVSDTHSSIFDAGASIILNPNFVKLISWYDNEFGYSNRVVDLISYIA 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caenorhabditis elegans GN=gpd-1 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.089e-16
Identity = 42/57 (73.68%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDFV D  SSIFDA A I+L+  FVKLVSWYDNE+GYS RVVDLI ++A
Sbjct:  282 YTEDQVVSTDFVSDPHSSIFDAGACISLNPNFVKLVSWYDNEYGYSNRVVDLIGYIA 338          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PONAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo abelii GN=GAPDH PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 2.729e-16
Identity = 40/61 (65.57%), Postives = 47/61 (77.05%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTE  VVS+D   D+ SS FDA AGIAL+  FVKL+SWYDNE+GYS RVVDL+ HMA  +
Sbjct:  275 GYTEHQVVSSDLNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMASKE 335          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.564e-16
Identity = 39/57 (68.42%), Postives = 48/57 (84.21%), Query Frame = -2
Query:  342 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 512
            YTED VVSTDF GD+ SSIFD+ A I+L+  FVKL++WYDNE+GYS RVVDLI ++A
Sbjct:  281 YTEDQVVSTDFTGDTHSSIFDSLACISLNPNFVKLIAWYDNEYGYSNRVVDLISYIA 337          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PLESA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pleurotus sajor-caju GN=GPD PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            G+T D VVSTDFVG + SSIFD+ AGI L+  FVKL++WYDNE+GYS RVVDL+ ++A+
Sbjct:  272 GFTSDSVVSTDFVGSTDSSIFDSTAGIQLNPNFVKLIAWYDNEYGYSRRVVDLLKYVAE 330          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_HAEIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Haemophilus influenzae GN=gapA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 4.655e-16
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -2
Query:  345 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 515
            GYTED VVSTDF G + +S+FDA AGIAL+  FVKLVSWYDNE GYS +V+DL+ H+
Sbjct:  278 GYTEDAVVSTDFNGCALTSVFDADAGIALTDSFVKLVSWYDNETGYSNKVLDLVAHI 334          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3P3_CAEEL7.181e-1773.68Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEEL7.181e-1773.68Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P_BUCAI9.379e-1764.41Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3P3_CAEBR1.225e-1671.93Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]
G3P2_CAEBR1.225e-1671.93Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Caen... [more]
G3P1_CAEEL2.089e-1673.68Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Caen... [more]
G3P_PONAB2.729e-1665.57Glyceraldehyde-3-phosphate dehydrogenase OS=Pongo ... [more]
G3P_BRUMA3.564e-1668.42Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_PLESA4.655e-1664.41Glyceraldehyde-3-phosphate dehydrogenase OS=Pleuro... [more]
G3P_HAEIN4.655e-1668.42Glyceraldehyde-3-phosphate dehydrogenase OS=Haemop... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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