CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PG_CRIFA (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Crithidia fasciculata GN=GAPDG PE=3 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 1.656e-13
Identity = 34/61 (55.74%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  345 GYTEDDVVSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWYDNEWGYSTRVVDLIVHM 515
            G+T++++VS+DF+ D+RSSI+D+KA +  +    K+F K+VSWYDNEWGYS RVVDL+  M
Sbjct:  291 GFTDEELVSSDFINDARSSIYDSKATLQNNLPGEKRFFKVVSWYDNEWGYSHRVVDLVRFM 351          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PG_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Leishmania mexicana GN=GAPG PE=1 SV=3)

HSP 1 Score: 75.0998 bits (183), Expect = 2.162e-13
Identity = 33/62 (53.23%), Postives = 49/62 (79.03%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALS----KKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            G+T++++VS DF+ D+RSS++D+KA +  +    K+F K+VSWYDNEW YS RVVDL+ +MA
Sbjct:  291 GFTDEELVSADFINDNRSSVYDSKATLQNNLPGEKRFFKVVSWYDNEWAYSHRVVDLVRYMA 352          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 31/43 (72.09%), Postives = 40/43 (93.02%), Query Frame = -2
Query:  387 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNE 515
            GYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE
Sbjct:  262 GYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.217e-13
Identity = 35/44 (79.55%), Postives = 39/44 (88.64%), Query Frame = -2
Query:  384 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEW 515
            GYTED VVSTDF+GDSRSSIFDA A I+L+  FVKLVSWYDNE+
Sbjct:  281 GYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 4.078e-12
Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED +VS+D  G+S SSI D    + L   F K++SWYDNE+GYSTRVVDL   + K
Sbjct:  277 GYTEDPIVSSDIKGNSHSSIVDGLETMVLENGFAKILSWYDNEFGYSTRVVDLAQKLVK 335          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 29/52 (55.77%), Postives = 43/52 (82.69%), Query Frame = -2
Query:  357 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDL 512
            YT +DVVS+DF+  + +  FD+KAGI L+ +FVKLV+WYDNE+GY+ ++V+L
Sbjct:  276 YTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVEL 327          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.509e-11
Identity = 29/60 (48.33%), Postives = 39/60 (65.00%), Query Frame = -2
Query:  336 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKT 515
            GYT++ +VS DF  D  SS  D++    L  K  ++V+WYDNEWG+S R+VD    MAKT
Sbjct:  277 GYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTAAQMAKT 336          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3PG_CRIFA1.656e-1355.74Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PG_LEIME2.162e-1353.23Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3P2_DROSU8.217e-1372.09Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
G3P1_GLORO8.217e-1379.55Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
G3P_BORBU4.078e-1255.93Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P1_GIALA1.550e-1155.77Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P_ZYMMO4.509e-1148.33Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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