CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.652e-21
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDD+VSTD +GD+ SSIFDAKAGIAL++ F+KLVSWYDNEWGYS RVVDLI +++K
Sbjct:  276 GYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISK 334          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 2.157e-21
Identity = 46/59 (77.97%), Postives = 53/59 (89.83%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDD+VSTD  GD+RSSIFDAKAGIAL+  F+KLVSWYDNEWGYS RVVDLI +++K
Sbjct:  274 GYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.817e-21
Identity = 48/59 (81.36%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVS DF GD+RSSIFDAKAGI LSK FVK+VSWYDNE+GYS RV+DLI HM K
Sbjct:  271 GYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQK 329          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 3.680e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  273 GYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 100.523 bits (249), Expect = 4.806e-21
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVS+DF+GDS SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  273 GYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVAK 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_TRISI (Glyceraldehyde-3-phosphate dehydrogenase OS=Trionyx sinensis GN=GAPDH PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 6.277e-21
Identity = 48/61 (78.69%), Postives = 53/61 (86.89%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTED VVS+DF GDSRSSIFDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  273 GYTEDQVVSSDFNGDSRSSIFDAAAGIALNDNFVKLVSWYDNEFGYSNRVVDLLVHMASKE 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PHYIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Phytophthora infestans GN=GPDA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.198e-21
Identity = 46/61 (75.41%), Postives = 53/61 (86.89%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTE  VVS+DF+GDS SSIFDA+AGIAL+  FVKLVSWYDNEWGYS+RV+DLI HM K +
Sbjct:  272 GYTEKAVVSSDFIGDSHSSIFDAEAGIALTDDFVKLVSWYDNEWGYSSRVLDLIEHMVKNE 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_ASHGO (Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya gossypii GN=GPD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.071e-20
Identity = 47/58 (81.03%), Postives = 52/58 (89.66%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            GYTED VVSTDF+GD+ SSIFDA AGI LS KFVKLVSWYDNE+GYSTRVVDL+ H+A
Sbjct:  272 GYTEDAVVSTDFLGDNNSSIFDASAGIMLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 1.398e-20
Identity = 45/59 (76.27%), Postives = 54/59 (91.53%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED+VVSTDF+GD+ SSIFDA AGIAL+  FVKLVSWYDNE GYSTRV+DL+V+++K
Sbjct:  275 GYTEDEVVSTDFIGDTHSSIFDAHAGIALNDNFVKLVSWYDNEMGYSTRVIDLLVYISK 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.385e-20
Identity = 45/59 (76.27%), Postives = 53/59 (89.83%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYT++DVVSTDF+GD+ SSIFDAKAGI L+  FVKL+SWYDNE+GYS RVVDLIV +AK
Sbjct:  275 GYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVAK 333          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3P_ASPOR1.652e-2176.27Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P_EMENI2.157e-2177.97Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_PANVR2.817e-2181.36Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P3_YEAST3.680e-2181.36Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P2_YEAST4.806e-2181.36Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P_TRISI6.277e-2178.69Glyceraldehyde-3-phosphate dehydrogenase OS=Triony... [more]
G3P_PHYIN8.198e-2175.41Glyceraldehyde-3-phosphate dehydrogenase OS=Phytop... [more]
G3P_ASHGO1.071e-2081.03Glyceraldehyde-3-phosphate dehydrogenase OS=Ashbya... [more]
G3P_DICDI1.398e-2076.27Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_YARLI2.385e-2076.27Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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