CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 2.637e-19
Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYT++ VVS+DF+ DSRSS+FDAKAGI L+  FVKLVSWYDNE+GYSTRVVDL+ H+AK
Sbjct:  274 GYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.637e-19
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  273 GYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.444e-19
Identity = 45/59 (76.27%), Postives = 50/59 (84.75%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVSTDF+G   SSIFD KAGI LS  FVKL+SWYDNE+GYSTRVVDL+ H+AK
Sbjct:  274 GYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVAK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 3.444e-19
Identity = 46/61 (75.41%), Postives = 50/61 (81.97%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTED VVS DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  273 GYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 3.444e-19
Identity = 44/59 (74.58%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVS+DF+GD+ +SIFDA AGI LS KFVKL+SWYDNE+GYS RVVDLI ++AK
Sbjct:  273 GYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVAK 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GY+ED +VSTD  GD RSSIFDA AGIAL+ +FVKL+SWYDNEWGYS RV+DLI ++AK
Sbjct:  275 GYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAK 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GY+ED +VS+D  GDSRSSIFDA AGIAL+  F+KL+SWYDNEWGYS RVVDLI ++AK
Sbjct:  274 GYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIAK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  339 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 512
            YT DDVVS+D +G++ SSIFD KAGI+L+K FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  276 YTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAK 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.498e-19
Identity = 45/59 (76.27%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVS+DF+GD+ SSIFDA AGI LS KFVKLV+WYDNE+GYSTRVVDL+  +AK
Sbjct:  272 GYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAK 330          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 5.875e-19
Identity = 43/59 (72.88%), Postives = 50/59 (84.75%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED VVS DF+G+S SSIFDA AGI+L+  FVKLVSWYDNEWGYS R +DL+V MA+
Sbjct:  275 GYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMAQ 333          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3P_PICAN2.637e-1974.58Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_COTJA2.637e-1975.41Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P_DEBHA3.444e-1976.27Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CHICK3.444e-1975.41Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3P1_YEAST3.444e-1974.58Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_PARBA4.498e-1972.88Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_AJECA4.498e-1972.88Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]
G3P2_TRIKO4.498e-1972.41Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P2_KLULA4.498e-1976.27Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P_USTMA5.875e-1972.88Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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