CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PT_RAT (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Rattus norvegicus GN=Gapdhs PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = -2 
Query:  345 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 512
            YTED VVSTDF GDS SSIFDAKAGIAL+  FVKLVSWYDNE+GYS RVVDL+ +M
Sbjct:  372 YTEDQVVSTDFNGDSHSSIFDAKAGIALNDNFVKLVSWYDNEYGYSHRVVDLLRYM 427
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_JACOR (Glyceraldehyde-3-phosphate dehydrogenase, muscle OS=Jaculus orientalis PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 45/61 (73.77%), Postives = 50/61 (81.97%), Query Frame = -2 
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTE  VVS+DF GDS SS FDA AGIAL+  FVKLVSWYDNE+GYS RVVDL+VHMA  +
Sbjct:  303 GYTEHQVVSSDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMASKE 363
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 1.309e-18
Identity = 43/59 (72.88%), Postives = 51/59 (86.44%), Query Frame = -2 
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTEDDVVSTDF G+  +S+FDAKAGIAL+  FVKLVSWYDNE GYS +V+DLI H++K
Sbjct:  273 GYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK 331
[Close]
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 43/58 (74.14%), Postives = 51/58 (87.93%), Query Frame = -2 
Query:  339 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 512
            YTED+VVS+D  G+  SSIFDAKAGI+L+K FVKLVSWYDNEWGYS RV+DLI ++AK
Sbjct:  275 YTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAK 332
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3PT_RAT1.309e-1880.36Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P1_SHIFL1.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY1.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_SALTI1.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_JACOR1.309e-1873.77Glyceraldehyde-3-phosphate dehydrogenase, muscle O... [more]
G3P1_ESCF31.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOLI1.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL61.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO571.309e-1872.88Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_SORMA1.709e-1874.14Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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