CX306350

Overview
NameCX306350
Unique NameCX306350
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length519
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = -2
Query:  339 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 515
            GYTED++VS+D  G++ SSIFDAKAGI+L+  FVKLVSWYDNEWGYS RV+DL+ ++AK
Sbjct:  274 GYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVAK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3PT_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase, testis-specific OS=Bos taurus GN=GAPDHS PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 42/56 (75.00%), Postives = 50/56 (89.29%), Query Frame = -2
Query:  345 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 512
            YTED+VVSTDF+ D+ SSIFDAKAGIAL+  FVKL+SWYDNE+GYS RVVDL+ +M
Sbjct:  335 YTEDEVVSTDFLSDTHSSIFDAKAGIALNDNFVKLISWYDNEYGYSNRVVDLVRYM 390          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 40/57 (70.18%), Postives = 52/57 (91.23%), Query Frame = -2
Query:  345 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 515
            GYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  272 GYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 1.709e-18
Identity = 40/57 (70.18%), Postives = 52/57 (91.23%), Query Frame = -2
Query:  345 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 515
            GYT+++VVSTDF+ D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  272 GYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.232e-18
Identity = 41/58 (70.69%), Postives = 50/58 (86.21%), Query Frame = -2
Query:  339 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 512
            YT D+VVSTD +G++ SSIFD KAGI+L+  FVKLVSWYDNEWGYS RV+DL+ H+AK
Sbjct:  275 YTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAK 332          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.232e-18
Identity = 42/58 (72.41%), Postives = 53/58 (91.38%), Query Frame = -2
Query:  342 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMA 515
            GYTED VVS+DF+ D+RSSIFDA+AGI LS +FVKL++WYDNE+GYSTRVVDL+ ++A
Sbjct:  274 GYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVA 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agaricus bisporus GN=gpd1 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.232e-18
Identity = 41/58 (70.69%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  339 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 512
            YTE+DVVSTDFVG + S IFDAKAGIAL+ +F+KLV+WYDNEWGY+ RV D +V++AK
Sbjct:  278 YTEEDVVSTDFVGSNYSMIFDAKAGIALNSRFMKLVAWYDNEWGYARRVCDEVVYVAK 335          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P_DANRE (Glyceraldehyde-3-phosphate dehydrogenase OS=Danio rerio GN=gapdh PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 44/61 (72.13%), Postives = 49/61 (80.33%), Query Frame = -2
Query:  333 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAKTQ 515
            GYTE  VVSTDF GD RSSIFDA AGIAL+  FVKLV+WYDNE+GYS RV DL+ HMA  +
Sbjct:  273 GYTEHQVVSTDFNGDCRSSIFDAGAGIALNDHFVKLVTWYDNEFGYSNRVCDLMAHMASKE 333          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Trichoderma koningii GN=gpd1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 42/58 (72.41%), Postives = 51/58 (87.93%), Query Frame = -2
Query:  339 YTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHMAK 512
            YTEDD+VSTD + D  SS FDAKAGIAL+K FVK++SWYDNE+GYS RVVDLIV+++K
Sbjct:  274 YTEDDIVSTDILTDPHSSTFDAKAGIALNKNFVKVMSWYDNEYGYSRRVVDLIVYVSK 331          
BLAST of CX306350 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 2.916e-18
Identity = 40/57 (70.18%), Postives = 51/57 (89.47%), Query Frame = -2
Query:  345 GYTEDDVVSTDFVGDSRSSIFDAKAGIALSKKFVKLVSWYDNEWGYSTRVVDLIVHM 515
            GYT+++VVSTDF  D+ SS+FDAKAGI+L+ KFVKL+SWYDNE+GYS RV+DLI +M
Sbjct:  272 GYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
The following BLAST results are available for this feature:
BLAST of CX306350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 167
Match NameE-valueIdentityDescription
G3P_PODAN1.709e-1869.49Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3PT_BOVIN1.709e-1875.00Glyceraldehyde-3-phosphate dehydrogenase, testis-s... [more]
G3P2_DROPS1.709e-1870.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME1.709e-1870.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_TRIAT2.232e-1870.69Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]
G3P_PICCI2.232e-1872.41Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P1_AGABI2.232e-1870.69Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Agar... [more]
G3P_DANRE2.916e-1872.13Glyceraldehyde-3-phosphate dehydrogenase OS=Danio ... [more]
G3P1_TRIKO2.916e-1872.41Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Tric... [more]
G3P1_DROME2.916e-1870.18Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]

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Properties
Property NameValue
Genbank descriptionC18017A12Rv Drought1 Citrus clementina cDNA clone C18017A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306350 ID=CX306350; Name=CX306350; organism=Citrus clementina; type=EST; length=519bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAGCAGCTGAAGAACAGGTCTTC
GATACTAACTAGATGAAAAATTATAAAAGCAAGTTTCCAATAGACAATTG
TTTTCTCGCTAACAAAACATAAGTTGGTTCACCAACTCTTCTTGCATACT
ACAAGGGAAAATCTAAGCACAACCCTGCATGAGCAGGTAAGGCTCTGGAT
AATGTCTTGGAAGCAATTTTATTTAAACTCAGACCCTCTACATAGAAACA
CAAACACCACATTTAGCGCAAAGAAACACCACACTTAGCACAACTAAGTG
TGTTACATACTCAAGCCACGCCGAGTAAGTTACTGGGTCTTCGCCATGTG
GACAATCAAATCCACCACACGAGTACTGTAGCCCCACTCATTGTCATACC
ATGAGACAAGCTTCACAAATTTCTTACTCAAAGCAATACCAGCCTTGGCA
TCAAAGATACTTGACCTACTGTCACCAACAAAGTCGGTGGATACCACATC
ATCCTCAGTGTATCCCCCG
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