CX306356

Overview
NameCX306356
Unique NameCX306356
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length517
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF_FRAAN (Profilin OS=Fragaria ananassa PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNMIVERLGDYL++QGL
Sbjct:  100 ALLIGIYDEPMTPGQCNMIVERLGDYLVEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF3_MAIZE (Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 28/32 (87.50%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNM+VERLGDYL++QGL
Sbjct:  100 ALVIGIYDEPMTPGQCNMVVERLGDYLVEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF2_MALDO (Profilin-2 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL+IGIYDEPMTPGQCNM+VERLGDYLI+QGL
Sbjct:  100 ALLIGIYDEPMTPGQCNMVVERLGDYLIEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF1_CITSI (Profilin OS=Citrus sinensis PE=1 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 5.888e-11
Identity = 30/32 (93.75%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEP+TPGQCNMIVERLGDYLI+QGL
Sbjct:  100 ALIIGIYDEPLTPGQCNMIVERLGDYLIEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROFA_ORYSJ (Profilin-A OS=Oryza sativa subsp. japonica GN=Os10g0323600 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 27/32 (84.38%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            AL++GIYDEPMTPGQCNM+VERLGDYL++QGL
Sbjct:  100 ALVVGIYDEPMTPGQCNMVVERLGDYLVEQGL 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF4_HEVBR (Profilin-4 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 29/34 (85.29%), Postives = 33/34 (97.06%), Query Frame = -2
Query:  415 SAALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 516
            S ALIIGIYDEP+TPGQCNMIVERLGDYL++QG+
Sbjct:   98 SQALIIGIYDEPLTPGQCNMIVERLGDYLLEQGM 131          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF1_SOYBN (Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 30/32 (93.75%), Postives = 31/32 (96.88%), Query Frame = -2
Query:  418 AALIIGIYDEPMTPGQCNMIVERLGDYLIDQG 513
            AALIIGIYDEPMTPGQCNM+VER GDYLIDQG
Sbjct:   99 AALIIGIYDEPMTPGQCNMVVERPGDYLIDQG 130          
BLAST of CX306356 vs. ExPASy Swiss-Prot
Match: PROF1_HEVBR (Profilin-1 OS=Hevea brasiliensis PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 29/32 (90.62%), Postives = 32/32 (100.00%), Query Frame = -2
Query:  415 ALIIGIYDEPMTPGQCNMIVERLGDYLIDQGL 510
            ALIIGIYDEPMTPGQCNMIVERLGDYL++QG+
Sbjct:  100 ALIIGIYDEPMTPGQCNMIVERLGDYLLEQGM 131          
The following BLAST results are available for this feature:
BLAST of CX306356 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PROF_FRAAN5.888e-1190.63Profilin OS=Fragaria ananassa PE=1 SV=1[more]
PROF3_MAIZE5.888e-1187.50Profilin-3 OS=Zea mays GN=PRO3 PE=2 SV=1[more]
PROF2_MALDO5.888e-1190.63Profilin-2 OS=Malus domestica PE=1 SV=1[more]
PROF1_CITSI5.888e-1193.75Profilin OS=Citrus sinensis PE=1 SV=2[more]
PROFA_ORYSJ7.691e-1184.38Profilin-A OS=Oryza sativa subsp. japonica GN=Os10... [more]
PROF4_HEVBR7.691e-1185.29Profilin-4 OS=Hevea brasiliensis PE=1 SV=1[more]
PROF1_SOYBN7.691e-1193.75Profilin-1 OS=Glycine max GN=PRO1 PE=1 SV=1[more]
PROF1_HEVBR7.691e-1190.63Profilin-1 OS=Hevea brasiliensis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC18017B06Rv Drought1 Citrus clementina cDNA clone C18017B06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306356 ID=CX306356; Name=CX306356; organism=Citrus clementina; type=EST; length=517bp
TTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTTTTTTTTTTTTTAGA
ACCTTCCCAAGGGAAAAATATCTTTTACCAAAAATTGAGCATCCTTTAGA
ACCTTCCCAAGGGAAAAATAAATTCAACAACCAACGCAAAATACATTGAG
AAACAAGAATCTCACAAGTTTTACAACTCAAATTGACACATCCATTAGGA
TCCACTGTAATAGTGATTGGTAAAGTACCTTGACAACCATAACAATACTA
CAAATAGATGATATCAAGAACTTCCACATGCACCAAATCTTTCCTTTCCA
CACACAGTTCCCATAACTTTGAATACTGTAATATTATTACACCGAAGTTC
AACAGTGCGAGCTTTTTAGGGAAGCCAAGAAATGAAACAAATTAGCGGAC
ATACAAACCACCTAAAGACCCTGATCAATGAGATAATCACCAAGCCTTTC
AACAATCATGTTGCACTGCCCAGGGGTCATCGGCTCATCATAGATTCCAA
TGATTAAGGCTGCGCTG
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