CX306364
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32 Identity = 68/134 (50.75%), Postives = 97/134 (72.39%), Query Frame = 1 Query: 103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 ++PMR ++QK+ +NI VGESG+RLT+A +L++L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L +Y+L +F + G FGI+EHI++ G++YDP GI+GMD V LERPG+RV Sbjct: 17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2) HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31 Identity = 63/133 (47.37%), Postives = 95/133 (71.43%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 +PMR ++ K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA VT+RG+KA+ L+ L + + + + G FGI+EHI + G+KYDP GI GMD + ++RPG+R+ Sbjct: 25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRI 157
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31 Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 1 Query: 70 QQTRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 Q M + NPMRE+ + K+V+NI VGESG+R +A +LE+L Q P + A+ T+++FGIR+ E I VT+RG+KA++ L+ L VKE L R++ + G F FGI EHIDL G+ YDP GI+GMD V L+R GYRV Sbjct: 2 QAVEMEKKAGNENPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRV 145
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1) HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31 Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 1 Query: 103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 ++PMR +++K+ +NI VGESG+RLT+A +L+QL+GQ P+ KA+ T R FGIRR E IA VT+RG KA +LL+ L + L +F + G FGI+EHI++ G++YDP GI+GMD V LERPG+RV Sbjct: 17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1) HSP 1 Score: 131.724 bits (330), Expect = 1.831e-30 Identity = 67/134 (50.00%), Postives = 95/134 (70.90%), Query Frame = 1 Query: 103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 ++PMR+ +++K+ +NI VGESG+RLT+A +LE+L+GQ P+ KA+ T R FGIRR E IA VT+RG KA ++L+ L + L +F + G FGI EHI++ G++YDP GI+GMD V LERPG+RV Sbjct: 17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29 Identity = 68/150 (45.33%), Postives = 99/150 (66.00%), Query Frame = 1 Query: 55 AVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 +V + R E SNPMR+ +V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T SFGIRR + I V +R ++A++ L+ L + EL F + G FG++EHI L G++YDP GI+GMD V LERPG+RV Sbjct: 2 SVVDEETRRKILEDWESNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRV 151
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1) HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29 Identity = 68/136 (50.00%), Postives = 93/136 (68.38%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 NPM + +++K+V+N VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T SFGIR+ I VT+RG KA + L++ + + E L +F D G F FGI EHID G KYDP GI+GMD V LERPG+RV Sbjct: 10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRV 145
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29 Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 NPMR++K+ K+ +NI +GESGDRL +A ++L++L+G PV++ ++ T+R FGIR+ ++I VT+RG +A + L L+ Y L + +F D G FGI EH+ L G +YDP GI+GMD + LER GYR+ Sbjct: 14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRI 146
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28 Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 NPM E+++ K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T FGIR+ + IAC VT+RG++A ++L+ L+ L F + G GI EHID+ G+KYDP GI+GM+ V E+PG+R+ Sbjct: 2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRI 134
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28 Identity = 59/133 (44.36%), Postives = 90/133 (67.67%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 NP R + V K+V+++ VGE+GD+L A +++ +++G TPV S A+ T+ +FGIR+ I+C VT+RG+ A + LE+ +K+ E ++ R F G F FGI+EH D G YDP GI+G+D VVL+R G R+ Sbjct: 2 NPNRSVAVDKVVVHMGVGEAGDKLVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRI 134 The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bpback to top |