CX306364

Overview
NameCX306364
Unique NameCX306364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRHO (50S ribosomal protein L5P OS=Pyrococcus horikoshii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.706e-32
Identity = 68/134 (50.75%), Postives = 97/134 (72.39%), Query Frame = 1
Query:  103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            ++PMR  ++QK+ +NI VGESG+RLT+A  +L++L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +Y+L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LERPG+RV
Sbjct:   17 AHPMRRPRIQKVTINIGVGESGERLTKAEIMLQRLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDYKLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AERPE (50S ribosomal protein L5P OS=Aeropyrum pernix GN=rpl5p PE=3 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 2.162e-31
Identity = 63/133 (47.37%), Postives = 95/133 (71.43%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            +PMR  ++ K+ +NIS+G+SG+RL RAA+VLE+L+GQ PVF KA+ T+R+FG+R+ E IA  VT+RG+KA+  L+  L    + +   +  + G   FGI+EHI + G+KYDP  GI GMD  + ++RPG+R+
Sbjct:   25 SPMRRPRIVKVTVNISIGQSGERLQRAAEVLEELTGQKPVFRKAKRTIRAFGVRKGENIAVMVTLRGEKALNFLKRALDAVGHRIKTSSIDEHGNVSFGIEEHILIPGVKYDPRVGILGMDVAITIQRPGHRI 157          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.817e-31
Identity = 70/145 (48.28%), Postives = 96/145 (66.21%), Query Frame = 1
Query:   70 QQTRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            Q   M  +    NPMRE+ + K+V+NI VGESG+R  +A  +LE+L  Q P  + A+ T+++FGIR+ E I   VT+RG+KA++ L+  L VKE  L R++  + G F FGI EHIDL G+ YDP  GI+GMD  V L+R GYRV
Sbjct:    2 QAVEMEKKAGNENPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRV 145          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRFU (50S ribosomal protein L5P OS=Pyrococcus furiosus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.291e-31
Identity = 68/134 (50.75%), Postives = 95/134 (70.90%), Query Frame = 1
Query:  103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            ++PMR  +++K+ +NI VGESG+RLT+A  +L+QL+GQ P+  KA+ T R FGIRR E IA  VT+RG KA +LL+  L   +  L   +F + G   FGI+EHI++ G++YDP  GI+GMD  V LERPG+RV
Sbjct:   17 AHPMRRPRIEKVTINIGVGESGERLTKAEIMLQQLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYELLKRLLAAVDNRLKASSFDEHGNVCFGIEEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRAB (50S ribosomal protein L5P OS=Pyrococcus abyssi GN=rpl5p PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 1.831e-30
Identity = 67/134 (50.00%), Postives = 95/134 (70.90%), Query Frame = 1
Query:  103 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            ++PMR+ +++K+ +NI VGESG+RLT+A  +LE+L+GQ P+  KA+ T R FGIRR E IA  VT+RG KA ++L+  L   +  L   +F + G   FGI EHI++ G++YDP  GI+GMD  V LERPG+RV
Sbjct:   17 AHPMRKPRIEKVTINIGVGESGERLTKAEIMLERLTGQKPIRRKAKKTNRDFGIRRGEPIAVKVTLRGPKAYEMLKRLLAAVDNRLKASSFDEHGNVCFGIDEHINIPGVEYDPEIGIFGMDVCVTLERPGFRV 150          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METKA (50S ribosomal protein L5P OS=Methanopyrus kandleri GN=rpl5p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29
Identity = 68/150 (45.33%), Postives = 99/150 (66.00%), Query Frame = 1
Query:   55 AVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            +V   +  R   E   SNPMR+ +V K+ +NI VGESGDRL +A ++L++L+GQ PV+++A+ T  SFGIRR + I   V +R ++A++ L+  L   + EL    F + G   FG++EHI L G++YDP  GI+GMD  V LERPG+RV
Sbjct:    2 SVVDEETRRKILEDWESNPMRKPRVGKVTVNIGVGESGDRLQKAYELLQELTGQKPVYTRAKQTNPSFGIRRGQPIGVKVDLRREQAIEFLDWTLDAVDRELHESQFDEFGNVCFGLEEHIALEGVEYDPEIGIFGMDIAVTLERPGFRV 151          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METJA (50S ribosomal protein L5P OS=Methanocaldococcus jannaschii GN=rpl5p PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.187e-29
Identity = 68/136 (50.00%), Postives = 93/136 (68.38%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYE---LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            NPM + +++K+V+N  VGESGDRLT+ A+V+E+L+GQ P+ ++A+ T  SFGIR+   I   VT+RG KA + L++  +  + E   L   +F D G F FGI EHID  G KYDP  GI+GMD  V LERPG+RV
Sbjct:   10 NPMLKPRIEKVVVNFGVGESGDRLTKGAQVIEELTGQKPIRTRAKQTNPSFGIRKKLPIGLKVTLRGKKAEEFLKNAFEAFQKEGKKLYDYSFDDYGNFSFGIHEHIDFPGQKYDPMIGIFGMDVCVTLERPGFRV 145          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_SULSO (50S ribosomal protein L5P OS=Sulfolobus solfataricus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.024e-29
Identity = 61/133 (45.86%), Postives = 92/133 (69.17%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            NPMR++K+ K+ +NI +GESGDRL +A ++L++L+G  PV++ ++ T+R FGIR+ ++I   VT+RG +A + L   L+   Y L + +F D G   FGI EH+ L G +YDP  GI+GMD  + LER GYR+
Sbjct:   14 NPMRKVKLSKVTVNIGLGESGDRLQKAYQLLQELTGAKPVYTISKKTIREFGIRKGQEIGVKVTLRGAQAEEFLRKVLEAIGYRLKKSSFDDYGNVSFGIAEHVILPGARYDPEIGIFGMDIAITLERAGYRI 146          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 60/133 (45.11%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            NPM E+++ K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T   FGIR+ + IAC VT+RG++A ++L+  L+     L    F + G    GI EHID+ G+KYDP  GI+GM+  V  E+PG+R+
Sbjct:    2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRI 134          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 6.511e-28
Identity = 59/133 (44.36%), Postives = 90/133 (67.67%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            NP R + V K+V+++ VGE+GD+L  A +++ +++G TPV S A+ T+ +FGIR+   I+C VT+RG+ A + LE+ +K+ E ++  R F   G F FGI+EH D  G  YDP  GI+G+D  VVL+R G R+
Sbjct:    2 NPNRSVAVDKVVVHMGVGEAGDKLVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRI 134          
The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL5_PYRHO9.706e-3250.7550S ribosomal protein L5P OS=Pyrococcus horikoshii... [more]
RL5_AERPE2.162e-3147.3750S ribosomal protein L5P OS=Aeropyrum pernix GN=r... [more]
RL5_ARCFU4.817e-3148.2850S ribosomal protein L5P OS=Archaeoglobus fulgidu... [more]
RL5_PYRFU6.291e-3150.7550S ribosomal protein L5P OS=Pyrococcus furiosus G... [more]
RL5_PYRAB1.831e-3050.0050S ribosomal protein L5P OS=Pyrococcus abyssi GN=... [more]
RL5_METKA1.187e-2945.3350S ribosomal protein L5P OS=Methanopyrus kandleri... [more]
RL5_METJA1.187e-2950.0050S ribosomal protein L5P OS=Methanocaldococcus ja... [more]
RL5_SULSO2.024e-2945.8650S ribosomal protein L5P OS=Sulfolobus solfataric... [more]
RL5_METTH6.511e-2845.1150S ribosomal protein L5P OS=Methanobacterium ther... [more]
RL5_METHJ6.511e-2844.3650S ribosomal protein L5P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionC18017C04Rv Drought1 Citrus clementina cDNA clone C18017C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGA
GCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTC
GGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTT
AGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGA
ATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTG
GTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGA
ATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGT
AGG
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