CX306364

Overview
NameCX306364
Unique NameCX306364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 60/133 (45.11%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            +PM++I ++K+VLN+ VG+SGD +  A++ LEQ+SG+ P    A+ T R +G+R+ E I   VT+RGD A  LL+  L+ K   +  R F + G + FGI+EHID+ G+KY+PS GI G+   V L RPGY +
Sbjct:    7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGI 139          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26
Identity = 64/135 (47.41%), Postives = 85/135 (62.96%), Query Frame = 1
Query:  109 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  +FGIR+   I   VT+RG  A + L    +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  E+ GYRV
Sbjct:   11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRV 145          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 1
Query:  109 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            PM++ ++QK+ +N  VGE+GDRLT  AKV+E+L+GQ+PV + A+ T  ++GIR+   I   VT+RG  A + L+   +  K     L   +F   G F FG+ EHID  G KYDPS GIYGMD  V  ++ GYRV
Sbjct:   11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRV 145          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25
Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-RPGYRV 501
            N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G  P  + A+ +VR F IR+   I   VT+R D A+  L   L VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +VL+ R GYR+
Sbjct:    2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLKRRGGYRI 135          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25
Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            N M++  + K  +NI VGE G++LTRA K++E L  Q PV + ++ T   FGIR+ + IAC VT+RG+KA +++   L   E  +    F   G   FGI+EHID+ G+KYDP  GI+GMD  V  ++PG+R+
Sbjct:    2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRI 134          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.024e-25
Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1
Query:  112 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            MR   V+K+++++ VGESG  L  A  +L  ++GQ  V   A+ T+ +F I++NE I C VT+RG KA + LE+ L + E  L R  F   G   FGI+EH D  G++YDP+ G++GMD  VVL+RPG R+
Sbjct:    1 MRTPIVEKVIVHMGVGESGQHLVNAEDILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERI 131          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 55/137 (40.15%), Postives = 86/137 (62.77%), Query Frame = 1
Query:   91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYR 498
            E K  N MR + + K+ +NI VGESG+RL +A +++++L+G  PV++K R ++R FG+R+   I    T+R   A++ L+  L    + L + +F + G   FGI EH+ + G +YDP  GI+GMD  + L RPGYR
Sbjct:    5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYR 141          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25
Identity = 58/133 (43.61%), Postives = 89/133 (66.92%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            +PM+ I ++K+V+NI VG SG++L +AA +L++L+G  P   +A+ +++ FGIR+ E I   VT+R D+A+  L   L+     + + +F D G   FGI+EHI L G+KYDP+ GI+GMD  V L +PG RV
Sbjct:   13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRV 145          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.737e-25
Identity = 61/134 (45.52%), Postives = 83/134 (61.94%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL-ERPGYRV 501
            N MREI + K+V+NI VG +G+RL RAAKVLE L+   P F+ A+ TVR F IR+   I   VT+R D A+  L+     K+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V   R GYR+
Sbjct:    7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRGGYRI 140          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24
Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 1
Query:  106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL-ERPGYRV 501
            NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G     + A+ ++R F IR+   I   VT+R   AM+ L+    VK+Y++   +F   G   FGI ++ D  G+KYDP  GI+GMD  +V   R GYR+
Sbjct:    2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVFRRRGGYRI 135          
The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL5_NITMS2.735e-2645.1150S ribosomal protein L5P OS=Nitrosopumilus mariti... [more]
RL5_METM62.735e-2647.4150S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_METM57.959e-2645.9350S ribosomal protein L5P OS=Methanococcus maripal... [more]
RL5_THEVO1.039e-2547.0150S ribosomal protein L5P OS=Thermoplasma volcaniu... [more]
RL5_METST1.773e-2543.6150S ribosomal protein L5P OS=Methanosphaera stadtm... [more]
RL5_METAC3.024e-2544.2750S ribosomal protein L5P OS=Methanosarcina acetiv... [more]
RL5_SULAC5.159e-2540.1550S ribosomal protein L5P OS=Sulfolobus acidocalda... [more]
RL5_PYRAE5.159e-2543.6150S ribosomal protein L5P OS=Pyrobaculum aerophilu... [more]
RL5_PICTO6.737e-2545.5250S ribosomal protein L5P OS=Picrophilus torridus ... [more]
RL5_THEAC1.149e-2444.0350S ribosomal protein L5P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC18017C04Rv Drought1 Citrus clementina cDNA clone C18017C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGA
GCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTC
GGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTT
AGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGA
ATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTG
GTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGA
ATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGT
AGG
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