CX306364
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_NITMS (50S ribosomal protein L5P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26 Identity = 60/133 (45.11%), Postives = 89/133 (66.92%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 +PM++I ++K+VLN+ VG+SGD + A++ LEQ+SG+ P A+ T R +G+R+ E I VT+RGD A LL+ L+ K + R F + G + FGI+EHID+ G+KY+PS GI G+ V L RPGY + Sbjct: 7 SPMKKISLEKVVLNMGVGKSGDVIEIASRALEQISGKKPSARNAKETQRDWGVRKGEPIGVAVTIRGDDAKALLKRLLEAKGNTVNGRAFDNFGNYSFGIREHIDIPGVKYEPSIGILGLGISVTLTRPGYGI 139
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 2.735e-26 Identity = 64/135 (47.41%), Postives = 85/135 (62.96%), Query Frame = 1 Query: 109 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG A + L + K L +F G F FG+ EHID G KYDPS GIYGMD V E+ GYRV Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRV 145
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 7.959e-26 Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 1 Query: 109 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T ++GIR+ I VT+RG A + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V ++ GYRV Sbjct: 11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRV 145
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_THEVO (50S ribosomal protein L5P OS=Thermoplasma volcanium GN=rpl5p PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 1.039e-25 Identity = 63/134 (47.01%), Postives = 88/134 (65.67%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLE-RPGYRV 501 N M+EI + K+V+NI VG++GDRLT+AAKVLE L+G P + A+ +VR F IR+ I VT+R D A+ L L VK+Y++ +F G FGI ++ D G+KYDP GI+GMD +VL+ R GYR+ Sbjct: 2 NQMQEIIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKPTQTLAKKSVRDFNIRKRLPIGVKVTLRKDDAVNFLNKALYVKDYKIPDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVLKRRGGYRI 135
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METST (50S ribosomal protein L5P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl5p PE=3 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 1.773e-25 Identity = 58/133 (43.61%), Postives = 85/133 (63.91%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 N M++ + K +NI VGE G++LTRA K++E L Q PV + ++ T FGIR+ + IAC VT+RG+KA +++ L E + F G FGI+EHID+ G+KYDP GI+GMD V ++PG+R+ Sbjct: 2 NVMQKPFIAKATINIGVGEGGEKLTRAEKLIETLVDQKPVRTYSKVTNPEFGIRKKQPIACKVTLRGEKADKIISMVLSGLENRIKASQFDKEGNVSFGIREHIDIPGVKYDPDIGIFGMDVSVTFQKPGHRI 134
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_METAC (50S ribosomal protein L5P OS=Methanosarcina acetivorans GN=rpl5p PE=3 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 3.024e-25 Identity = 58/131 (44.27%), Postives = 84/131 (64.12%), Query Frame = 1 Query: 112 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 MR V+K+++++ VGESG L A +L ++GQ V A+ T+ +F I++NE I C VT+RG KA + LE+ L + E L R F G FGI+EH D G++YDP+ G++GMD VVL+RPG R+ Sbjct: 1 MRTPIVEKVIVHMGVGESGQHLVNAEDILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQKAQEFLETALGIVEKTLNRSQFDSFGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERI 131
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_SULAC (50S ribosomal protein L5P OS=Sulfolobus acidocaldarius GN=rpl5p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25 Identity = 55/137 (40.15%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 91 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYR 498 E K N MR + + K+ +NI VGESG+RL +A +++++L+G PV++K R ++R FG+R+ I T+R A++ L+ L + L + +F + G FGI EH+ + G +YDP GI+GMD + L RPGYR Sbjct: 5 EAKKENVMRRVVLDKVTVNIGVGESGERLQKAYQLVQELTGVKPVYTKGRKSIREFGVRKGAPIGVKATLRRQAAVEFLKKVLPAVNFRLKQSSFDNYGNVSFGIAEHVLIPGTRYDPEIGIFGMDVAITLVRPGYR 141
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PYRAE (50S ribosomal protein L5P OS=Pyrobaculum aerophilum GN=rpl5p PE=3 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 5.159e-25 Identity = 58/133 (43.61%), Postives = 89/133 (66.92%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 +PM+ I ++K+V+NI VG SG++L +AA +L++L+G P +A+ +++ FGIR+ E I VT+R D+A+ L L+ + + +F D G FGI+EHI L G+KYDP+ GI+GMD V L +PG RV Sbjct: 13 HPMQRIYIEKVVVNIGVGASGEKLEKAAGLLKELTGAEPSRRRAKKSIKDFGIRKGEPIGVAVTLRRDQAVNFLMRALQAVNNRVKKTSFDDRGNVCFGIKEHILLPGVKYDPAVGIWGMDVCVKLAKPGLRV 145
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PICTO (50S ribosomal protein L5P OS=Picrophilus torridus GN=rpl5p PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 6.737e-25 Identity = 61/134 (45.52%), Postives = 83/134 (61.94%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL-ERPGYRV 501 N MREI + K+V+NI VG +G+RL RAAKVLE L+ P F+ A+ TVR F IR+ I VT+R D A+ L+ K+Y++ +F G FGI ++ D G+KYDP GI+GMD +V R GYR+ Sbjct: 7 NSMREIVIDKVVVNIGVGAAGERLNRAAKVLELLTHHKPAFTSAKRTVRDFNIRKGLNIGVKVTLRKDDALSFLKEAFYAKDYKIPVYSFDKNGNAYFGISDYTDFKGMKYDPDIGIFGMDIAIVFRRRGGYRI 140
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_THEAC (50S ribosomal protein L5P OS=Thermoplasma acidophilum GN=rpl5p PE=3 SV=1) HSP 1 Score: 112.464 bits (280), Expect = 1.149e-24 Identity = 59/134 (44.03%), Postives = 85/134 (63.43%), Query Frame = 1 Query: 106 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVL-ERPGYRV 501 NPM E+ + K+V+NI VG++GDRLT+AAKVLE L+G + A+ ++R F IR+ I VT+R AM+ L+ VK+Y++ +F G FGI ++ D G+KYDP GI+GMD +V R GYR+ Sbjct: 2 NPMEEVIIDKVVVNIGVGQAGDRLTKAAKVLEMLTGHKATNTLAKKSIRDFNIRKRLPIGVKVTLRKKDAMEFLQKAFYVKDYKITDYSFDKHGNAYFGISDYTDFKGMKYDPDIGIFGMDVAIVFRRRGGYRI 135 The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bpback to top |