CX306364
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1) HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22 Identity = 50/141 (35.46%), Postives = 89/141 (63.12%), Query Frame = 1 Query: 82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 M+ + S+ MRE ++K+V+++ VG+ G+ L A +++E+++ Q V + ++ T+ FGIR+ + I VT+RG+ A L++ L++ ++ + F DTG FG+++H D +YDP+ GIYG+D + RPGYRV Sbjct: 1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRV 139
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21 Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1 Query: 82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501 M+ + MRE +++K+V++++VGE G L A ++L++++GQT V + A FG R + I VT+RG A LE L + + R F +TG F FG++EH +YDP GIYG+D V L RPGYRV Sbjct: 1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRV 139
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12 Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = 1 Query: 31 RLRLH*AAAVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 RLR H + V + ++ E NPM+ ++K+V+N+ VGE+ ++T AA L +++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 9 RLRTHYDSVV----RPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12 Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 1 Query: 103 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 SN M+ K++K+V+N+ VGE+ ++ A L +++GQ PV +KAR ++ F +R + C VT+R D+ + L+ + +VK++ L+ +F G + G++EHI I YD I+GMD V Sbjct: 29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12 Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1 Query: 79 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 +M + NPM + K+V+N+ VGE+ ++T AA L Q++GQ PV ++AR + +F +R N+ + VT+R + + ++ + +V+++ L ++F G + G++EHI I YD I+GMD V Sbjct: 21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12 Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 1 Query: 70 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 ++ R A ++K S N M K+ K+V+N+ VGE+ + T AA L ++GQ PV ++AR ++ F +R N I VT+RG + + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12 Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 1 Query: 70 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 ++ R A ++K S N M K+ K+V+N+ VGE+ + T AA L ++GQ PV ++AR ++ F +R N I VT+RG + + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11 Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 1 Query: 79 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 R A ++K S N M K+ K+V+N+ VGE+ + T AA L ++GQ PV +KAR ++ F +R + I VT+RG++ + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 18 RGAMQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AGRRK (50S ribosomal protein L5 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplE PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11 Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 1 Query: 79 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474 R A ++K S N M+ K+ K+V+N+ VGE+ + T AA L ++GQ PV + AR ++ F +R N I VT+RG + + L+ + +V+++ L ++F G F GI+EHI I YD ++GMD V Sbjct: 19 RAALQEKFSYANEMQIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITHARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11 Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1 Query: 124 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 477 K++K+V+N+ VGE+ + A L +SGQ PV + AR ++ +F +R N KI C VT+R D+ LE + +VKE+ ++F G F FG++E I I YD I GMD +V Sbjct: 30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157 The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 101
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bpback to top |