CX306364

Overview
NameCX306364
Unique NameCX306364
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length503
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_HALLT (50S ribosomal protein L5P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 6.972e-22
Identity = 50/141 (35.46%), Postives = 89/141 (63.12%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            M+  +  S+ MRE  ++K+V+++ VG+ G+ L  A +++E+++ Q  V + ++ T+  FGIR+ + I   VT+RG+ A   L++ L++   ++ +  F DTG   FG+++H D    +YDP+ GIYG+D    + RPGYRV
Sbjct:    1 MSESESASHEMREPYLEKVVVHMGVGQGGEPLADAEEIIEEITDQQSVRTTSKRTIAEFGIRKGDPIGVKVTLRGEDAHAFLDTALELA--DISKSQFDDTGNLSFGVEDHTDFPSQEYDPNIGIYGLDVTTTIVRPGYRV 139          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_HALWD (50S ribosomal protein L5P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl5p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.553e-21
Identity = 55/141 (39.01%), Postives = 81/141 (57.45%), Query Frame = 1
Query:   82 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLERPGYRV 501
            M+      + MRE +++K+V++++VGE G  L  A ++L++++GQT V + A      FG R  + I   VT+RG  A   LE  L +    +  R F +TG F FG++EH      +YDP  GIYG+D  V L RPGYRV
Sbjct:    1 MSETDSTFHEMREPQLEKVVVHMAVGEGGRELANAEEILQEIAGQTAVRTTATRAASQFGAREGDPIGAKVTLRGADAQSFLEKALPL--VTISERQFDETGNFSFGVEEHTTFPSQEYDPQIGIYGLDVTVNLTRPGYRV 139          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AZOC5 (50S ribosomal protein L5 OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.835e-12
Identity = 47/158 (29.75%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   31 RLRLH*AAAVTHHQQTRMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            RLR H  + V    + ++  E    NPM+   ++K+V+N+ VGE+     ++T AA  L +++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:    9 RLRTHYDSVV----RPKLIEEFGYKNPMQVPVIEKIVINMGVGEATADTKKVTTAAADLARIAGQKPVLTRARKAISNFKLRENQPVGAKVTLRQARMYEFMDRLITVALPRVRDFRGLNPKSFDGRGNYAMGMKEHIVFPEINYDQVEQIWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_PHEZH (50S ribosomal protein L5 OS=Phenylobacterium zucineum (strain HLK1) GN=rplE PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.541e-12
Identity = 44/134 (32.84%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  103 SNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            SN M+  K++K+V+N+ VGE+     ++  A   L +++GQ PV +KAR ++  F +R    + C VT+R D+  + L+  +     +VK++  L+  +F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   29 SNEMQIPKLEKIVINMGVGEAVADSKKIQSAMADLAKIAGQKPVSTKARTSIAGFKLREGMTVGCKVTLRKDRMYEFLDRLITIALPRVKDFRGLKPTSFDGRGNYAMGLKEHIVFPEINYDQIDQIWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_XANP2 (50S ribosomal protein L5 OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 43/142 (30.28%), Postives = 77/142 (54.23%), Query Frame = 1
Query:   79 RMASEKKLSNPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            +M  +    NPM    + K+V+N+ VGE+     ++T AA  L Q++GQ PV ++AR  + +F +R N+ +   VT+R  +  + ++  +     +V+++  L  ++F   G +  G++EHI    I YD    I+GMD  V
Sbjct:   21 KMIEQFGYKNPMEVPTIDKIVINMGVGEATADTKKVTTAAADLAQIAGQKPVITRARKAISNFKLRENQPVGAKVTLRKARMYEFMDRLVSIALPRVRDFRGLNPKSFDGRGNYAMGVKEHIVFPEINYDRVEQIWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RHIEC (50S ribosomal protein L5 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   70 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RHIE6 (50S ribosomal protein L5 OS=Rhizobium etli (strain CIAT 652) GN=rplE PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.543e-12
Identity = 49/147 (33.33%), Postives = 80/147 (54.42%), Query Frame = 1
Query:   70 QQTRMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            ++ R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV ++AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   16 ERIRKAMQEKFSYANEMMIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITRARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AGRT5 (50S ribosomal protein L5 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.903e-11
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 1
Query:   79 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            R A ++K S  N M   K+ K+V+N+ VGE+     + T AA  L  ++GQ PV +KAR ++  F +R +  I   VT+RG++  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   18 RGAMQEKFSYANVMMIPKLDKIVINMGVGEATADSKKPTIAAGDLAAIAGQKPVITKARNSIAGFKVREHMPIGAKVTLRGERMYEFLDRLINIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 161          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_AGRRK (50S ribosomal protein L5 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.486e-11
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 1
Query:   79 RMASEKKLS--NPMREIKVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYELLR-RNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFV 474
            R A ++K S  N M+  K+ K+V+N+ VGE+     + T AA  L  ++GQ PV + AR ++  F +R N  I   VT+RG +  + L+  +     +V+++  L  ++F   G F  GI+EHI    I YD    ++GMD  V
Sbjct:   19 RAALQEKFSYANEMQIPKLDKIVINMGVGEATADSKKPTVAAADLAAIAGQKPVITHARNSIAGFKVRENMPIGAKVTLRGARMYEFLDRLVNIALPRVRDFRGLNPKSFDGRGNFAMGIKEHIVFPEINYDKVDQMWGMDIIV 162          
BLAST of CX306364 vs. ExPASy Swiss-Prot
Match: RL5_RICPR (50S ribosomal protein L5 OS=Rickettsia prowazekii GN=rplE PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.246e-11
Identity = 46/128 (35.94%), Postives = 69/128 (53.91%), Query Frame = 1
Query:  124 KVQKLVLNISVGES---GDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGL-----KVKEYE-LLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVV 477
            K++K+V+N+ VGE+      +  A   L  +SGQ PV + AR ++ +F +R N KI C VT+R D+    LE  +     +VKE+     ++F   G F FG++E I    I YD    I GMD  +V
Sbjct:   30 KIKKIVINMGVGEAIADSKVINNALNDLTLISGQKPVVTLARKSIATFKLRENMKIGCKVTLRKDRMYDFLERLVIVALPRVKEFRGFSYKSFDGKGNFTFGLKEQIVFPEINYDKIDTIRGMDITIV 157          
The following BLAST results are available for this feature:
BLAST of CX306364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 101
Match NameE-valueIdentityDescription
RL5_HALLT6.972e-2235.4650S ribosomal protein L5P OS=Halorubrum lacusprofu... [more]
RL5_HALWD1.553e-2139.0150S ribosomal protein L5P OS=Haloquadratum walsbyi... [more]
RL5_AZOC53.835e-1229.7550S ribosomal protein L5 OS=Azorhizobium caulinoda... [more]
RL5_PHEZH6.541e-1232.8450S ribosomal protein L5 OS=Phenylobacterium zucin... [more]
RL5_XANP28.543e-1230.2850S ribosomal protein L5 OS=Xanthobacter autotroph... [more]
RL5_RHIEC8.543e-1233.3350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_RHIE68.543e-1233.3350S ribosomal protein L5 OS=Rhizobium etli (strain... [more]
RL5_AGRT51.903e-1134.0350S ribosomal protein L5 OS=Agrobacterium tumefaci... [more]
RL5_AGRRK2.486e-1134.0350S ribosomal protein L5 OS=Agrobacterium radiobac... [more]
RL5_RICPR3.246e-1135.9450S ribosomal protein L5 OS=Rickettsia prowazekii ... [more]

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Properties
Property NameValue
Genbank descriptionC18017C04Rv Drought1 Citrus clementina cDNA clone C18017C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306364 ID=CX306364; Name=CX306364; organism=Citrus clementina; type=EST; length=503bp
GCGGGGACTCTTACATATTAGGGTTTGTTCCGTCTCCGTCTTCACTGAGC
AGCGGCAGTAACTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAAC
TTTCGAACCCCATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATC
TCCGTTGGTGAAAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGA
GCAACTCAGTGGACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTC
GGTCTTTTGGGATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTT
AGAGGTGACAAGGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGA
ATATGAGCTTCTGCGTCGGAATTTCAGTGACACTGGCTGTTTTGGCTTTG
GTATTCAAGAGCATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGA
ATTTATGGTATGGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGT
AGG
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