CX306381

Overview
NameCX306381
Unique NameCX306381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC1_MAGGR (Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnaporthe grisea GN=UBC1 PE=3 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 5.676e-37
Identity = 68/84 (80.95%), Postives = 80/84 (95.24%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICS+LTDPNPDDPLVPEIAH+YK+ +A+YESTAR WT+KYA+
Sbjct:   64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSMLTDPNPDDPLVPEIAHVYKTARAQYESTAREWTRKYAI 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UB2D4_HUMAN (Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens GN=UBE2D4 PE=1 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 7.413e-37
Identity = 69/84 (82.14%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPKVAF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVPEIAH YK+D+ KY   AR WTQKYAM
Sbjct:   64 PPKVAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPEIAHTYKADREKYNRLAREWTQKYAM 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC4_YEAST (Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces cerevisiae GN=UBC4 PE=1 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.682e-37
Identity = 66/84 (78.57%), Postives = 80/84 (95.24%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPK++F TK++HPNIN+NG+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIAH+YK+D+ KYE+TAR WT+KYA+
Sbjct:   65 PPKISFTTKIYHPNINANGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAHIYKTDRPKYEATAREWTKKYAV 148          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC4_SCHPO (Ubiquitin-conjugating enzyme E2 4 OS=Schizosaccharomyces pombe GN=ubc4 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 9.682e-37
Identity = 67/84 (79.76%), Postives = 80/84 (95.24%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPKV F T+++HPNINSNGSICLDIL++QWSPALTISKVLLSICSLLTDPNPDDPLVPEIAH+YK+D+++YE +AR WT+KYA+
Sbjct:   64 PPKVNFTTRIYHPNINSNGSICLDILRDQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHVYKTDRSRYELSAREWTRKYAI 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.651e-36
Identity = 67/84 (79.76%), Postives = 78/84 (92.86%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPK+A  TK++HPNINSNG+ICLDILK+QWSPALTISKVLLSICSLLTD NPDDPLVPEIAH+YK D+ KYE+TA+ WT+KYA+
Sbjct:   64 PPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 2.817e-36
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPK+AF TK++HPNINSNGSICLDIL+ QWSPALT+SKVLLSICSLL DPNPDDPLVP+IA +YKSDK KY   AR WTQKYAM
Sbjct:   64 PPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC5_YEAST (Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharomyces cerevisiae GN=UBC5 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.275e-36
Identity = 67/84 (79.76%), Postives = 79/84 (94.05%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPKV F TK++HPNINS+G+ICLDILK+QWSPALT+SKVLLSICSLLTD NPDDPLVPEIA +YK+DKAKYE+TA+ WT+KYA+
Sbjct:   65 PPKVNFTTKIYHPNINSSGNICLDILKDQWSPALTLSKVLLSICSLLTDANPDDPLVPEIAQIYKTDKAKYEATAKEWTKKYAV 148          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UB2D2_XENLA (Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 6.275e-36
Identity = 68/84 (80.95%), Postives = 75/84 (89.29%), Query Frame = -1
Query:  245 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 496
            PPKVAF T+++HPNINSNGSICLDIL+ QWSPALTISKVLLSICSLL DPNPDDPLVPEIA +YK+D+ KY   AR WTQKYAM
Sbjct:   64 PPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CX306381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
UBC1_MAGGR5.676e-3780.95Ubiquitin-conjugating enzyme E2-16 kDa OS=Magnapor... [more]
UB2D4_HUMAN7.413e-3782.14Ubiquitin-conjugating enzyme E2 D4 OS=Homo sapiens... [more]
UBC4_YEAST9.682e-3778.57Ubiquitin-conjugating enzyme E2 4 OS=Saccharomyces... [more]
UBC4_SCHPO9.682e-3779.76Ubiquitin-conjugating enzyme E2 4 OS=Schizosacchar... [more]
UBC4_CANAL1.651e-3679.76Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D1_MOUSE2.817e-3680.95Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]
UB2D1_HUMAN2.817e-3680.95Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.817e-3680.95Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UBC5_YEAST6.275e-3679.76Ubiquitin-conjugating enzyme E2-16 kDa OS=Saccharo... [more]
UB2D2_XENLA6.275e-3680.95Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laev... [more]

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Properties
Property NameValue
Genbank descriptionC18017D09Rv Drought1 Citrus clementina cDNA clone C18017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306381 ID=CX306381; Name=CX306381; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAGACCATTAACTACGTT
CCATCGAAGAAGCTTCAAACACAAACATTCAACATTAACATAAAAACGTC
CCGCCCTTGCAACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCC
TCCCCAAAGCAAGTTAAAGAAAATAGATAGACAACACACACAACATATTT
CAATAAATGCTCCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGC
ATACTTCTGTGTCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGG
ACTTGTACATGTGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGA
TCAGTAAGCAAGGAGCAGATAGAGAGCAGGACCTTTGAAATGGTAAGCGC
TGGACTCCACTGTTCTTTAAGGATATCAAGACAGATGCTTCCATTGCTGT
TGATGTTCGGGTGGAACACCTTGGTCCTAAAAGCAACCTTTGGGGG
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