CX306381

Overview
NameCX306381
Unique NameCX306381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9509 contig Ccv1_Contig9509:392..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.028e-18
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPK+ F TKV+HPNI+S  G+ICLDILK  WSP +T+   L+S+ +LL  P P+DP   E+A  Y  D+  +  TA  WT+ YA
Sbjct:   66 PPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYA 149          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   70 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   70 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINS-NGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPKV F TK++HPNI+S  G+ICLDILK+QW+ A+T+  VLLS+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   70 PPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.901e-18
Identity = 40/84 (47.62%), Postives = 57/84 (67.86%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSN-GSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPK+ F TK++HPN++S  G+ICLDILK+QWSP  T+   L+S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA
Sbjct:   67 PPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYA 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2T_HUMAN (Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens GN=UBE2T PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 7.707e-18
Identity = 41/87 (47.13%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PP++ F T ++HPNI+S G ICLD+LK      W P+L I+ VL SI  L+++PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   65 PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHA 151          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.242e-17
Identity = 35/83 (42.17%), Postives = 60/83 (72.29%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y +D+ K++  A+ WT ++A
Sbjct:   99 PPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.825e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PP+V F T ++HPNI+S+G ICLDILK      W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K +K  +   A+ WT+ +A
Sbjct:   65 PPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.995e-17
Identity = 42/84 (50.00%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  260 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 496
            PP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY  +K +Y     E   +SWT
Sbjct:   67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDILK----EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PP++ F T ++HPNI+S G ICLD+LK      W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K +K  +   AR WT+K+A
Sbjct:   65 PPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
The following BLAST results are available for this feature:
BLAST of CX306381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
UBC1_YEAST2.028e-1850.00Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]
UBE2K_MOUSE5.901e-1851.19Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN5.901e-1851.19Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN5.901e-1851.19Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBC1_SCHPO5.901e-1847.62Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UBE2T_HUMAN7.707e-1847.13Ubiquitin-conjugating enzyme E2 T OS=Homo sapiens ... [more]
COP10_ARATH2.242e-1742.17Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBE2T_MOUSE3.825e-1747.13Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBC2_WHEAT4.995e-1750.00Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBE2T_BOVIN6.524e-1744.83Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC18017D09Rv Drought1 Citrus clementina cDNA clone C18017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306381 ID=CX306381; Name=CX306381; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAGACCATTAACTACGTT
CCATCGAAGAAGCTTCAAACACAAACATTCAACATTAACATAAAAACGTC
CCGCCCTTGCAACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCC
TCCCCAAAGCAAGTTAAAGAAAATAGATAGACAACACACACAACATATTT
CAATAAATGCTCCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGC
ATACTTCTGTGTCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGG
ACTTGTACATGTGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGA
TCAGTAAGCAAGGAGCAGATAGAGAGCAGGACCTTTGAAATGGTAAGCGC
TGGACTCCACTGTTCTTTAAGGATATCAAGACAGATGCTTCCATTGCTGT
TGATGTTCGGGTGGAACACCTTGGTCCTAAAAGCAACCTTTGGGGG
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