CX306381

Overview
NameCX306381
Unique NameCX306381
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length496
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9509 contig Ccv1_Contig9509:392..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 42/87 (48.28%), Postives = 60/87 (68.97%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PP V+F T ++HPNI+++G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK ++  ++  AR  T+KYA
Sbjct:   78 PPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.524e-17
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  260 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR-----SWT 496
            PP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A MY   K +Y    R     SWT
Sbjct:   67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.521e-17
Identity = 36/84 (42.86%), Postives = 58/84 (69.05%), Query Frame = -1
Query:  248 PPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 496
            PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y++D+  ++  AR + +++A
Sbjct:   70 PPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.113e-16
Identity = 37/81 (45.68%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  254 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQK 496
            PP V F +KVFHPN+ ++G ICLDIL+ +WSP   +S +L SI SLL+DPNP+ P     A +YK ++ +YE   ++  ++
Sbjct:   67 PPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16
Identity = 41/84 (48.81%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  260 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 496
            PP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+  +K +Y     E   +SWT
Sbjct:   67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.898e-16
Identity = 41/84 (48.81%), Postives = 54/84 (64.29%), Query Frame = -1
Query:  260 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKY-----ESTARSWT 496
            PP V F +++FHPNI ++GSICLDIL+ QWSP   ++ +L SI SLL DPNP+ P   E A M+   K +Y     E   +SWT
Sbjct:   67 PPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306381 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.238e-16
Identity = 36/72 (50.00%), Postives = 52/72 (72.22%), Query Frame = -1
Query:  281 PPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYE 496
            PP V F +K+FHPN+ ++GSICLDIL+ +WSP   +S +L SI SLL +PNP+ P   + A +Y+ +K +YE
Sbjct:   67 PPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
The following BLAST results are available for this feature:
BLAST of CX306381 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 184
Match NameE-valueIdentityDescription
UBC37_ARATH6.524e-1748.28Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC1_ARATH6.524e-1750.00Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC14_SCHPO8.521e-1742.86Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBCD6_DROME1.113e-1645.68Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_MEDSA1.453e-1648.81Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]
UBC2_ARATH1.898e-1648.81Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBE2B_RAT3.238e-1650.00Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT3.238e-1650.00Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE3.238e-1650.00Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.238e-1650.00Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]

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Properties
Property NameValue
Genbank descriptionC18017D09Rv Drought1 Citrus clementina cDNA clone C18017D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306381 ID=CX306381; Name=CX306381; organism=Citrus clementina; type=EST; length=496bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTAAGACCATTAACTACGTT
CCATCGAAGAAGCTTCAAACACAAACATTCAACATTAACATAAAAACGTC
CCGCCCTTGCAACTCCTCCCAACACCATTCTAAAACACCAACGTCTGCCC
TCCCCAAAGCAAGTTAAAGAAAATAGATAGACAACACACACAACATATTT
CAATAAATGCTCCTTTTTCTGCAATATCCTAACAACCTTCATCCCATGGC
ATACTTCTGTGTCCAGCTCCTGGCCGTGGATTCATATTTGGCCTTGTCGG
ACTTGTACATGTGGGCAATCTCCGGTACAAGAGGGTCGTCGGGATTTGGA
TCAGTAAGCAAGGAGCAGATAGAGAGCAGGACCTTTGAAATGGTAAGCGC
TGGACTCCACTGTTCTTTAAGGATATCAAGACAGATGCTTCCATTGCTGT
TGATGTTCGGGTGGAACACCTTGGTCCTAAAAGCAACCTTTGGGGG
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