CX306383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: ROC1_SPIOL (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea PE=1 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 1.453e-16 Identity = 52/152 (34.21%), Postives = 87/152 (57.24%), Query Frame = 3 Query: 6 GTVVDVEIIRHKG-GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 G V E+I ++ ++R F FVTM++ EEA+ AV + ++ GR + V K + P+R+ E ++YV NL W V ++ L + FS + VS++VV GRS G+GFV+ +++ E AI++LDG+ L GR +R+ ++ Sbjct: 79 GVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMDGRQLTVN--KAAPRGSPERAPRGDF-EPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEE 227
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15 Identity = 48/150 (32.00%), Postives = 83/150 (55.33%), Query Frame = 3 Query: 6 GTVVDVEIIRHK-GGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPAR---ETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRL 443 G + E++ K G++R F FVTM + E+A A + + + E+ GR I+V +K + + A E+ +K+Y+ NL+ V + L++FFS + +KV +S G+GFVSF+++EE E AI +L+ L G+ +R+ Sbjct: 108 GAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRV 257
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP4_HUMAN (Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 1.230e-15 Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++R GK++ F FV+ E+A AV + + +E+SG+II +VE + K+ Q +R LY+ NL + LR+ FS + S+KV+ +GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVML--EDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEE 373
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: EPABB_XENLA (Embryonic polyadenylate-binding protein B OS=Xenopus laevis GN=epabp-B PE=2 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.042e-14 Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ G++R F FV + EEAQ AV + + +EV+GR++ R+E + K+ Q R LYV NL + LR+ FS S+KV+ + G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 HSP 2 Score: 66.2402 bits (160), Expect = 9.125e-11 Identity = 45/162 (27.78%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G +R + FV + E A A+ + ++ R + F FK R + +Y+ N + L+E FSA N +S KV+ N GRS G+GFV++ EEA+ A++ ++GKE+ GR + + QK + K+K Sbjct: 123 GDILSCKVVCDEYG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMM-DNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: EPAB_XENTR (Embryonic polyadenylate-binding protein OS=Xenopus tropicalis GN=epabp PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.360e-14 Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ G++R F FV + EEAQ AV++ + +EV+GR+I R+E + K+ Q R LYV NL + LR+ FS S+KV+ + G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 HSP 2 Score: 67.3958 bits (163), Expect = 4.096e-11 Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G +R + FV + E A A+ + ++ R + F FK R + +Y+ N + LRE FSA N +S KV+ + GRS G+GFV++ EEA+ A+S ++GKE+ GR + + QK + K+K Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETQEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMM-DDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PAP1L_HUMAN (Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.777e-14 Identity = 52/161 (32.30%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G ++ V+++R G +R F FV EEAQ AV + +EVSGR++ RVE + K+ Q R LYV NL + LR+ FS S+KV+ + G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEE 373 HSP 2 Score: 66.2402 bits (160), Expect = 9.125e-11 Identity = 53/165 (32.12%), Postives = 81/165 (49.09%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKKKK 497 G ++ ++ + G +R F FV + E AQ A+N + ++ R + F FK R +R A AR + +YV NL V L++ FS F + S V N G S +GFV+F EEA+ A+ ++GKE+ GR L QK V N+ K++ Sbjct: 123 GNILSCKVACDEHG-SRGFGFVHFETHEAAQQAINTMNGMLLNDRKV---FVGHFKSRR-EREAELGARALEFTNIYVKNLPVDVDEQGLQDLFS-QFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKR--VERQNELKRR 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: EPABA_XENLA (Embryonic polyadenylate-binding protein A OS=Xenopus laevis GN=epabp-A PE=1 SV=2) HSP 1 Score: 78.1814 bits (191), Expect = 2.320e-14 Identity = 49/161 (30.43%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ G++R F FV + EEAQ AV++ + +EV+GR+I R+E + K+ Q R LYV NL + LR+ F S+KV+ + G S G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVM--TEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 46/162 (28.40%), Postives = 79/162 (48.77%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G +R + FV + E A A+ + ++ R + F FK R + +Y+ N + LRE FSA N +S KV+ + GRS G+GFV++ EEA+ A+S ++GKE+ GR + + QK + K+K Sbjct: 123 GNILSCKVVCDEHG-SRGYGFVHFETHEAANRAIQTMNGMLLNDRKV---FVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMM-DDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP3_HUMAN (Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 3.031e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 43/152 (28.29%), Postives = 77/152 (50.66%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQK 458 G ++ ++ + G ++ + FV + E A+ A+ + + ++GR + F +FK R +R A AR + +Y+ N + L++ F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK Sbjct: 123 GNILSCNVVCDENG-SKGYGFVHFETHEAAERAIKKMNGMLLNGRKV---FVGQFKS-RKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQK 268
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_RAT (Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 45/163 (27.61%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR + +Y+ N + L+E F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_PONAB (Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR + +Y+ N + L++ F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279 The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bpback to top |