CX306383

Overview
NameCX306383
Unique NameCX306383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I V  A+K        K+   Q       R     LYV NL   +    LR+ FS      S+KV+     GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491
            G ++  +++  + G ++ + FV   + E A+ A+ + +   ++ R +   F  +FK  + +R A   AR  +   +Y+ N    +    L+E F   F P  S  V     G+S G+GFVSF   E+A+ A+  ++GKEL G+ + +   QK  +     K+K
Sbjct:  123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKSQK-EREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I V  A+K        K+   Q       R     LYV NL   +    LR+ FS      S+KV+     GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491
            G ++  +++  + G ++ + FV   + E A+ A+ + +   ++ R +   F  +FK  R +R A   AR  +   +Y+ N    +    L++ F   F P  S  V     G+S G+GFVSF   E+A+ A+  ++GKEL G+ + +   QK  +     K+K
Sbjct:  123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14
Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G  + V+++  + GK++ F FV+    E+AQ AV++ + +E++G+ I V  A+K        K+   Q       R     LYV NL   +    LR+ FS      S+KV+     GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491
            G ++  +++  + G ++ + FV   + E A+ A+ + +   ++ R +   F  +FK  R +R A   AR  +   +Y+ N    +    L++ F   F P  S  V     G+S G+GFVSF   E+A+ A+  ++GKEL G+ + +   QK  +     K+K
Sbjct:  123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 8.818e-14
Identity = 45/154 (29.22%), Postives = 78/154 (50.65%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            V +   + G+NR + FVT +  E+AQ A  +   +++ GRI+R++FA   K+       +   ++T     + +L + NL W ++   HL   FS  F  V    +     GR  G+ FV    ++ AE A++SL+G E+ GRP+ + +    D
Sbjct:   35 VVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 8.818e-14
Identity = 46/147 (31.29%), Postives = 77/147 (52.38%), Query Frame = 3
Query:   18 DVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            D+ I   K G N+  A+V  ++ +EA  A+ +    E+ GR I V+F  +    + Q S +    E   K L V+NLS+      LRE F       ++ +    N+GR+ G+ F+ F++ E+A+ A+ S +  E+ GR +RL+F Q
Sbjct:  350 DIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGE----KSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487          

HSP 2 Score: 70.8626 bits (172), Expect = 3.705e-12
Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 3
Query:   45 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G+ + FAF+  +S E+A+ A++  +  E+ GR IR+EF++        R  SA ++     L+V  LS       L+E F  + N   +++V   + G S G+GFV F+T E+A+ A  +++  E+ G  + L F +   D
Sbjct:  448 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT----LFVRGLSEDTTEETLKEAFDGSVN---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 1.152e-13
Identity = 45/160 (28.12%), Postives = 81/160 (50.62%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +  + +++ +  K R F FV  A+ E AQ AV++ + +E  G+ + V  A+K        +K   Q       +     L++ NL  +V    L+  FSA F  ++S  +    +G+S G+GFV + T EEA  A++ ++ + L G+PL +   Q+ +
Sbjct:  285 GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13
Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G  + V+++    GK+R F FV+    E+AQ AV+  + ++++G+ I       +VE   + K+   Q       R     LYV NL   +    LR+ F+   +  S+KV+     GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13
Identity = 46/160 (28.75%), Postives = 81/160 (50.62%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G  + V + R + G ++ F FV   + E A+ AV++ + +EV+G+ +       + E   + KK   ++     A+     LYV NL  +     LR  F A F  ++S  V   + G S G+GFV +++ +EA  A+S ++GK +  +PL +   Q+ D
Sbjct:  251 GPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKD 409          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13
Identity = 46/160 (28.75%), Postives = 80/160 (50.00%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +  + + +   GK++ F FV     E A  AV + + +E++G+ I V  A+K ++   +      A   +         L+V NL  ++ S  L E F   F  ++S  V   + G+S G+GFV F+T EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  272 GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKP-FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKD 430          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13
Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +  + + + + GK++ F FV     E A  AV + + +E++G+ I V  A+K        KK          A+     L+V NL   + S  L E F   F  ++S  V     G+S G+GFV F T EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  257 GKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKD 415          
The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PABP1_MOUSE3.958e-1430.43Polyadenylate-binding protein 1 OS=Mus musculus GN... [more]
PABP1_HUMAN3.958e-1430.43Polyadenylate-binding protein 1 OS=Homo sapiens GN... [more]
PABP1_BOVIN3.958e-1430.43Polyadenylate-binding protein 1 OS=Bos taurus GN=P... [more]
YOCE_SCHPO8.818e-1429.22Uncharacterized RNA-binding protein C4F6.14 OS=Sch... [more]
NUCL_XENLA8.818e-1431.29Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3[more]
PABP_SCHPO1.152e-1328.13Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPB_XENLA1.504e-1329.19Polyadenylate-binding protein 1-B OS=Xenopus laevi... [more]
PABP_CRYNE1.964e-1328.75Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_LODEL3.351e-1328.75Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANAL4.376e-1330.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]

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Properties
Property NameValue
Genbank descriptionC18017D11Rv Drought1 Citrus clementina cDNA clone C18017D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bp
GCGGGGGAACTGTTGTAGATGTTGAGATTATAAGGCACAAAGGTGGGAAA
AACAGAAACTTTGCATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGC
TGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGG
TTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAACGTTCTGCAAGT
GCCCCTGCTAGAGAAACACAACATAAGCTTTATGTGTCGAATCTTTCTTG
GAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATC
CTGTTTCCTCCAAGGTTGTTTTTGCGAGCAATGAAGGAAGATCCGCTGGG
TATGGCTTTGTCTCATTTGCCACAAAGGAAGAAGCAGAAGTAGCAATTTC
TTCTTTGGATGGCAAGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCG
GTCAAAAGAATGATGATGTATCAGAGAGTAACAAAAAAAAAAAAAAAAA
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