CX306383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_MOUSE (Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F +FK + +R A AR + +Y+ N + L+E F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKSQK-EREAELGARAKEFTNVYIKNFGEDMDDERLKELFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_HUMAN (Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR + +Y+ N + L++ F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP1_BOVIN (Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.958e-14 Identity = 49/161 (30.43%), Postives = 85/161 (52.80%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ + GK++ F FV+ E+AQ AV++ + +E++G+ I V A+K K+ Q R LYV NL + LR+ FS S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 44/163 (26.99%), Postives = 81/163 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+ + + ++ R + F +FK R +R A AR + +Y+ N + L++ F F P S V G+S G+GFVSF E+A+ A+ ++GKEL G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFG-KFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: YOCE_SCHPO (Uncharacterized RNA-binding protein C4F6.14 OS=Schizosaccharomyces pombe GN=SPBC4F6.14 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 8.818e-14 Identity = 45/154 (29.22%), Postives = 78/154 (50.65%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARET-----QHKLYVSNLSWKVRS-THLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 V + + G+NR + FVT + E+AQ A + +++ GRI+R++FA K+ + ++T + +L + NL W ++ HL FS F V + GR G+ FV ++ AE A++SL+G E+ GRP+ + + D Sbjct: 35 VVVTNPETGENRGYGFVTFSMLEDAQRAAKELKNKKLHGRILRLDFATPRKRSEVDTDQNKAVKKTIRQDNRPRLIIRNLPWSIKKPQHLEPHFS-KFGKVREIKIPTKGGGRMCGFAFVWMKDRKAAEEAMNSLNGTEIDGRPIAVDWAVSKD 187
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_XENLA (Nucleolin OS=Xenopus laevis GN=ncl PE=2 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 8.818e-14 Identity = 46/147 (31.29%), Postives = 77/147 (52.38%), Query Frame = 3 Query: 18 DVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 D+ I K G N+ A+V ++ +EA A+ + E+ GR I V+F + + Q S + E K L V+NLS+ LRE F ++ + N+GR+ G+ F+ F++ E+A+ A+ S + E+ GR +RL+F Q Sbjct: 350 DIRIPTGKDGSNKGIAYVEFSNEDEANKALEEKQGAEIEGRSIFVDFTGE----KSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEK-----ATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487 HSP 2 Score: 70.8626 bits (172), Expect = 3.705e-12 Identity = 43/141 (30.50%), Postives = 75/141 (53.19%), Query Frame = 3 Query: 45 GKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G+ + FAF+ +S E+A+ A++ + E+ GR IR+EF++ R SA ++ L+V LS L+E F + N +++V + G S G+GFV F+T E+A+ A +++ E+ G + L F + D Sbjct: 448 GRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGGPQGGGRGGSAQSKT----LFVRGLSEDTTEETLKEAFDGSVN---ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGEIDGNKVTLDFAKPKGD 581
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_SCHPO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Schizosaccharomyces pombe GN=pab1 PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 1.152e-13 Identity = 45/160 (28.12%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + +++ + K R F FV A+ E AQ AV++ + +E G+ + V A+K +K Q + L++ NL +V L+ FSA F ++S + +G+S G+GFV + T EEA A++ ++ + L G+PL + Q+ + Sbjct: 285 GEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERLKAEFSA-FGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPB_XENLA (Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-B PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.504e-13 Identity = 47/161 (29.19%), Postives = 84/161 (52.17%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ GK+R F FV+ E+AQ AV+ + ++++G+ I +VE + K+ Q R LYV NL + LR+ F+ + S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.964e-13 Identity = 46/160 (28.75%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + V + R + G ++ F FV + E A+ AV++ + +EV+G+ + + E + KK ++ A+ LYV NL + LR F A F ++S V + G S G+GFV +++ +EA A+S ++GK + +PL + Q+ D Sbjct: 251 GPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEA-FGTITSSKVMRDDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKD 409
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_LODEL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Lodderomyces elongisporus GN=PAB1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 3.351e-13 Identity = 46/160 (28.75%), Postives = 80/160 (50.00%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + + + GK++ F FV E A AV + + +E++G+ I V A+K ++ + A + L+V NL ++ S L E F F ++S V + G+S G+GFV F+T EEA AI+ ++ + + G+PL + Q+ D Sbjct: 272 GKITSIYLEKDAEGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLEKLSKYQGVNLFVKNLDEQIDSEKLEEEFKP-FGTITSSKVMVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKD 430
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CANAL (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida albicans GN=PAB1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 4.376e-13 Identity = 48/160 (30.00%), Postives = 77/160 (48.12%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + + + + GK++ F FV E A AV + + +E++G+ I V A+K KK A+ L+V NL + S L E F F ++S V G+S G+GFV F T EEA AI+ ++ + + G+PL + Q+ D Sbjct: 257 GKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKLEEEFKP-FGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKD 415 The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bpback to top |