CX306383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13 Identity = 50/160 (31.25%), Postives = 77/160 (48.12%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + R + GK++ F FV EAQ AV++ + G+ + V A+K + + RS A E K LY+ N+ LRE F A F ++S + + G S G+GFV ++ EEA A+S ++GK L RPL + Q+ D Sbjct: 251 GKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEF-APFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKD 409
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12 Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G V V + + GK+R F FV + E A AV + + +E+ G+ + V A+K ++ + R + E K L+V NL + S L E F F ++S V + G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+ D Sbjct: 263 GPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKD 421
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12 Identity = 45/161 (27.95%), Postives = 83/161 (51.55%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + V+++ GK++ F FV+ E+AQ AV++ + ++++G+ + +VE + K+ Q R LYV NL + LR+ F S+KV+ GRS G+GFV F++ EEA A++ ++G+ + +PL + Q+ ++ Sbjct: 215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373 HSP 2 Score: 67.0106 bits (162), Expect = 5.350e-11 Identity = 42/163 (25.77%), Postives = 83/163 (50.92%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491 G ++ +++ + G ++ + FV + E A+ A+++ + ++ R + F +FK R +R A AR + +Y+ N + L+E F + P S V + G+S G+GFVSF E+A+ A+ ++GK++ G+ + + QK + K+K Sbjct: 123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2) HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12 Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + +++ + G +R+F FV SPE A AV + + + ++ V A+K ++ Q S + LY+ NL V L+E FS N S KV+ S +G S G+GFV+++ EEA +A+ ++GK + +PL + Q+ ++ Sbjct: 249 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12 Identity = 51/161 (31.68%), Postives = 80/161 (49.69%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAV-----NQFDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + +++ GK++ F FV + ++A AV ++FD +E GR + + + R +++ A + Q LYV NL + L+E FS F V+S V G S G GFV+FAT EEA A+S L GK + +PL + Q+ +D Sbjct: 239 GKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12 Identity = 45/160 (28.12%), Postives = 79/160 (49.38%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + + + GK++ F FV + E A AV++ + +E++G+ I V A+K KK ++ L++ NL + S L E F F ++S V G+S G+GFV F++ EEA AI+ ++ + + G+PL + Q+ D Sbjct: 256 GKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKD 414
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3) HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12 Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRVEFA-KKFKKPRPQRSASAPARETQHK------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + +++ + GK++ F FV + E A+AAV + +++ G+ + V A KK ++ + + ++ +H+ LYV NL + LR FS N S+KV+ EGRS G+GFV F EA A++ L+G+ + +PL + Q+ ++ Sbjct: 207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVM-TDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEE 367 HSP 2 Score: 66.2402 bits (160), Expect = 9.125e-11 Identity = 39/163 (23.93%), Postives = 82/163 (50.31%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKEL-MGRPLRLKFGQKNDDVSESNKKK 491 G ++ ++ + G ++ + FV + E A ++++ + ++G+ + + KF + + + +YV N + L+EFF + ++S V + +G+S G+GFV+F T E AE A+ +L+GK++ G+ L + QK + + K+K Sbjct: 114 GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12 Identity = 48/165 (29.09%), Postives = 80/165 (48.48%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G + ++R + G +R F FV E A +AV + + + ++ V E +KF++ R R + LY+ NL V L+E FS N SSKV+ + +G S G+GFV+++ EEA A+S ++GK + +PL + Q+ +D Sbjct: 253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML-NPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12 Identity = 41/145 (28.28%), Postives = 77/145 (53.10%), Query Frame = 3 Query: 15 VDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKF 449 ++V ++ +K G ++ A++ + EA+ A+ + EV GR + +++ + + Q+ +T L V+NLS+ L+E F +S + +N+GR GY FV F T E+A+ A++S + E+ GR +RL+F Sbjct: 395 LEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---LIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532 HSP 2 Score: 68.9366 bits (167), Expect = 1.408e-11 Identity = 40/145 (27.59%), Postives = 77/145 (53.10%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 +++ ++ G+ + +AFV + E+A+ A+N + E+ GR IR+EF+ + +A + L+V LS LRE F + +S+++V + G S G+GFV F++ E+A+ A +++ E+ G + L F + Sbjct: 487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP-SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12 Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G + + + + GK++ F FV E A AV + + +E++G+ I V A+K KK ++ L++ NL + S L E F F ++S V G+S G+GFV F++ EEA AI+ ++ + G+PL + Q+ D Sbjct: 257 GAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKD 415 The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bpback to top |