CX306383

Overview
NameCX306383
Unique NameCX306383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_USTMA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago maydis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.749e-13
Identity = 50/160 (31.25%), Postives = 77/160 (48.12%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +    + R + GK++ F FV      EAQ AV++    +  G+ + V  A+K  +   +  RS  A   E   K     LY+ N+        LRE F A F  ++S  +  +  G S G+GFV ++  EEA  A+S ++GK L  RPL +   Q+ D
Sbjct:  251 GKITSCVLQRDEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSYEAAKNEKLAKFQGVNLYLKNIPESYDDERLREEF-APFGAITSCKIMRAPSGVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKD 409          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_PICGU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia guilliermondii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 49/160 (30.63%), Postives = 81/160 (50.62%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQ--RSASAPARETQHK-----LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G V  V +   + GK+R F FV   + E A  AV + + +E+ G+ + V  A+K ++   +  R   +   E   K     L+V NL   + S  L E F   F  ++S  V   + G+S G+GFV F++ EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  263 GPVTSVHLETDQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTRLEKLSKYQGVNLFVKNLDDSIDSEKLEEEFKP-FGTITSARVMVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKD 421          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPA_XENLA (Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-A PE=1 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 45/161 (27.95%), Postives = 83/161 (51.55%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRII-------RVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G  + V+++    GK++ F FV+    E+AQ AV++ + ++++G+ +       +VE   + K+   Q       R     LYV NL   +    LR+ F       S+KV+     GRS G+GFV F++ EEA  A++ ++G+ +  +PL +   Q+ ++
Sbjct:  215 GPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 373          

HSP 2 Score: 67.0106 bits (162), Expect = 5.350e-11
Identity = 42/163 (25.77%), Postives = 83/163 (50.92%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKKK 491
            G ++  +++  + G ++ + FV   + E A+ A+++ +   ++ R +   F  +FK  R +R A   AR  +   +Y+ N    +    L+E F   + P  S  V   + G+S G+GFVSF   E+A+ A+  ++GK++ G+ + +   QK  +     K+K
Sbjct:  123 GNILSCKVVCDENG-SKGYGFVHFETQEAAERAIDKMNGMLLNDRKV---FVGRFKS-RKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFG-KYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP5_ARATH (Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 46/161 (28.57%), Postives = 80/161 (49.69%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G +    +++ + G +R+F FV   SPE A  AV + +   +   ++ V  A+K        ++   Q   S   +     LY+ NL   V    L+E FS   N  S KV+  S +G S G+GFV+++  EEA +A+  ++GK +  +PL +   Q+ ++
Sbjct:  249 GDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEE 408          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP2_ARATH (Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.273e-12
Identity = 51/161 (31.68%), Postives = 80/161 (49.69%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAV-----NQFDTQE-VSGRIIRVEFAKKFKKPRPQRSASAPARETQHK-LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G +    +++   GK++ F FV   + ++A  AV     ++FD +E   GR  +    +   + R +++    A + Q   LYV NL   +    L+E FS  F  V+S  V     G S G GFV+FAT EEA  A+S L GK +  +PL +   Q+ +D
Sbjct:  239 GKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSP-FGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKED 398          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.663e-12
Identity = 45/160 (28.12%), Postives = 79/160 (49.38%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +  + + +   GK++ F FV   + E A  AV++ + +E++G+ I V  A+K        KK          ++     L++ NL   + S  L E F   F  ++S  V     G+S G+GFV F++ EEA  AI+ ++ + + G+PL +   Q+ D
Sbjct:  256 GKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKD 414          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_DROME (Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp PE=1 SV=3)

HSP 1 Score: 71.633 bits (174), Expect = 2.172e-12
Identity = 47/162 (29.01%), Postives = 84/162 (51.85%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVS-GRIIRVEFA-KKFKKPRPQRSASAPARETQHK------LYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G +   +++  + GK++ F FV   + E A+AAV   + +++  G+ + V  A KK ++ +  +      ++ +H+      LYV NL   +    LR  FS   N  S+KV+    EGRS G+GFV F    EA  A++ L+G+ +  +PL +   Q+ ++
Sbjct:  207 GKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESVFGVNLYVKNLDDTIDDDRLRIAFSPYGNITSAKVM-TDEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEE 367          

HSP 2 Score: 66.2402 bits (160), Expect = 9.125e-11
Identity = 39/163 (23.93%), Postives = 82/163 (50.31%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKEL-MGRPLRLKFGQKNDDVSESNKKK 491
            G ++  ++   + G ++ + FV   + E A  ++++ +   ++G+ +   +  KF   + +        +    +YV N +       L+EFF   +  ++S  V +  +G+S G+GFV+F T E AE A+ +L+GK++  G+ L +   QK  +  +  K+K
Sbjct:  114 GNILSCKVATDEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKV---YVGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEP-YGKITSYKVMSKEDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRK 272          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP3_ARATH (Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 48/165 (29.09%), Postives = 80/165 (48.48%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRV-----------EFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G +    ++R + G +R F FV     E A +AV + +   +   ++ V           E  +KF++ R  R   +        LY+ NL   V    L+E FS   N  SSKV+  + +G S G+GFV+++  EEA  A+S ++GK +  +PL +   Q+ +D
Sbjct:  253 GVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGAN----LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVML-NPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKED 412          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_CHICK (Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.837e-12
Identity = 41/145 (28.28%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   15 VDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKF 449
            ++V ++ +K G ++  A++   +  EA+ A+ +    EV GR + +++  +  +   Q+       +T   L V+NLS+      L+E F       +S  +  +N+GR  GY FV F T E+A+ A++S +  E+ GR +RL+F
Sbjct:  395 LEVRLVLNKEGSSKGMAYIEFKTEAEAEKALEEKQGTEVDGRAMVIDYTGEKSQQESQKGGGERESKT---LIVNNLSYAASEETLQELFKK----ATSIKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEF 532          

HSP 2 Score: 68.9366 bits (167), Expect = 1.408e-11
Identity = 40/145 (27.59%), Postives = 77/145 (53.10%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            +++ ++  G+ + +AFV   + E+A+ A+N  +  E+ GR IR+EF+      +   +A     +    L+V  LS       LRE F  +   +S+++V   + G S G+GFV F++ E+A+ A  +++  E+ G  + L F +
Sbjct:  487 IKMPQNNQGRPKGYAFVEFPTAEDAKEALNSCNNTEIEGRAIRLEFSSP-SWQKGNMNARGGFNQQSKTLFVRGLSEDTTEETLRESFEGS---ISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAK 627          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.838e-12
Identity = 45/160 (28.12%), Postives = 76/160 (47.50%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +  + + +   GK++ F FV     E A  AV + + +E++G+ I V  A+K        KK          ++     L++ NL   + S  L E F   F  ++S  V     G+S G+GFV F++ EEA  AI+ ++ +   G+PL +   Q+ D
Sbjct:  257 GAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKP-FGTITSARVMVDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKD 415          
The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PABP_USTMA9.749e-1331.25Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICGU1.273e-1230.63Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABPA_XENLA1.273e-1227.95Polyadenylate-binding protein 1-A OS=Xenopus laevi... [more]
PABP5_ARATH1.273e-1228.57Polyadenylate-binding protein 5 OS=Arabidopsis tha... [more]
PABP2_ARATH1.273e-1231.68Polyadenylate-binding protein 2 OS=Arabidopsis tha... [more]
PABP_DEBHA1.663e-1228.13Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_DROME2.172e-1229.01Polyadenylate-binding protein OS=Drosophila melano... [more]
PABP3_ARATH2.837e-1229.09Polyadenylate-binding protein 3 OS=Arabidopsis tha... [more]
NUCL_CHICK2.837e-1228.28Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1[more]
PABP_PICST4.838e-1228.13Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017D11Rv Drought1 Citrus clementina cDNA clone C18017D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bp
GCGGGGGAACTGTTGTAGATGTTGAGATTATAAGGCACAAAGGTGGGAAA
AACAGAAACTTTGCATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGC
TGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGG
TTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAACGTTCTGCAAGT
GCCCCTGCTAGAGAAACACAACATAAGCTTTATGTGTCGAATCTTTCTTG
GAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATC
CTGTTTCCTCCAAGGTTGTTTTTGCGAGCAATGAAGGAAGATCCGCTGGG
TATGGCTTTGTCTCATTTGCCACAAAGGAAGAAGCAGAAGTAGCAATTTC
TTCTTTGGATGGCAAGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCG
GTCAAAAGAATGATGATGTATCAGAGAGTAACAAAAAAAAAAAAAAAAA
back to top