CX306383

Overview
NameCX306383
Unique NameCX306383
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length499
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12
Identity = 43/159 (27.04%), Postives = 85/159 (53.46%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKN 461
            G  + V+++    GK++ F FV+  S E A+ AV + + ++++G++I V  A+K  + + +        + +        KLY+ NL   +    LR  FS+ F  +S +V     EG+S G+G + F++ E+A  A++ ++G+ L  +PL +   Q++
Sbjct:  214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSS-FGSIS-RVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 44/161 (27.33%), Postives = 79/161 (49.07%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKK 488
            G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V +    KK R  +     A  T   +YV N+S +      R+ F A +  V+S  +   +EG+S G+GFV+F T E A  A+  L+GKE  G+ L +   QK  +  E  +K
Sbjct:  177 GNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIP-KKDRQSKFEEMKANFTN--IYVKNISLEATDEEFRDLF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRK 333          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V     G S G+GFV F ++E+A+ A  +++  E+ G  + L + +
Sbjct:  514 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V     G S G+GFV F ++E+A+ A  +++  E+ G  + L + +
Sbjct:  513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3)

HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11
Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            +++ +++ GK++ +AF+  AS E+A+ A+N  + +E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V     G S G+GFV F ++E+A+ A  +++  E+ G  + L + +
Sbjct:  512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11
Identity = 46/161 (28.57%), Postives = 78/161 (48.45%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467
            G +V + I + +    R +AFV   +PE+A+ A    +  +   + + V  A KK ++ +  R       E Q        +YV N++  V    LR+ FS     ++S  +    +G+S G+GFV F+T EEA  A+ +  G+   G+PL +   QK +D
Sbjct:  225 GKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G +V   + +   GK + F FV     E+A  AV   +  E++G  + V  A+K        KK          A+     L+V NL   V    L E F A +  ++S  V  +  G+S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ D
Sbjct:  243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464
            G    V + R   G+N+ F FV   + E+A   V + +  E  G+ + V  A+K        KK          A+     L++ NL   +    L E F A +  ++S  V  +  G+S G+GFV F+T EEA  AI+  + + + G+PL +   Q+ D
Sbjct:  240 GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEF-APYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 398          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11
Identity = 42/145 (28.97%), Postives = 80/145 (55.17%), Query Frame = 3
Query:   21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455
            +++ +++ GK++ +AF+  AS E+A+ A+N  +  E+ GR IR+E     + PR   +A +   +T   L+V  LS       L+E F  +   V +++V     G S G+GFV F ++E+A+ A  +++  E+ G  + L + +
Sbjct:  512 IKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646          
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11
Identity = 45/161 (27.95%), Postives = 78/161 (48.45%), Query Frame = 3
Query:    6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKK 488
            G ++  ++ + + G ++ + FV   + E A  A+   +   ++ + + V      KK R  +     A  T   +YV N++ +V     RE F A F  V+S  +    EG+S G+GFV+F T E A  A+  L+GK+  G+ L +   QK  +  E  +K
Sbjct:  172 GNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFEEMKANFTN--VYVKNINNEVTDEEFRELF-AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRK 328          
The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
PAB4L_HUMAN6.319e-1227.04Polyadenylate-binding protein 4-like OS=Homo sapie... [more]
PABP_CHAGB1.078e-1127.33Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_PONAB1.078e-1128.97Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3[more]
NUCL_MACFA1.078e-1128.97Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3[more]
NUCL_HUMAN1.078e-1128.97Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3[more]
PABPX_ARATH1.839e-1128.57Probable polyadenylate-binding protein At2g36660 O... [more]
PABP_YEAST2.401e-1130.00Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_CANGA2.401e-1128.75Polyadenylate-binding protein, cytoplasmic and nuc... [more]
NUCL_MESAU2.401e-1128.97Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2[more]
PABP_NEUCR3.136e-1127.95Polyadenylate-binding protein, cytoplasmic and nuc... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC18017D11Rv Drought1 Citrus clementina cDNA clone C18017D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bp
GCGGGGGAACTGTTGTAGATGTTGAGATTATAAGGCACAAAGGTGGGAAA
AACAGAAACTTTGCATTTGTGACAATGGCTTCGCCGGAAGAAGCTCAGGC
TGCCGTTAATCAATTCGACACTCAGGAAGTCTCTGGGAGGATTATAAGGG
TTGAGTTTGCAAAGAAATTCAAGAAACCACGACCTCAACGTTCTGCAAGT
GCCCCTGCTAGAGAAACACAACATAAGCTTTATGTGTCGAATCTTTCTTG
GAAAGTTAGATCTACTCATCTCAGAGAATTTTTTTCAGCTAATTTTAATC
CTGTTTCCTCCAAGGTTGTTTTTGCGAGCAATGAAGGAAGATCCGCTGGG
TATGGCTTTGTCTCATTTGCCACAAAGGAAGAAGCAGAAGTAGCAATTTC
TTCTTTGGATGGCAAGGAGTTGATGGGGCGACCACTTCGTTTGAAATTCG
GTCAAAAGAATGATGATGTATCAGAGAGTAACAAAAAAAAAAAAAAAAA
back to top