CX306383
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 6.319e-12 Identity = 43/159 (27.04%), Postives = 85/159 (53.46%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQH-------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKN 461 G + V+++ GK++ F FV+ S E A+ AV + + ++++G++I V A+K + + + + + KLY+ NL + LR FS+ F +S +V EG+S G+G + F++ E+A A++ ++G+ L +PL + Q++ Sbjct: 214 GKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSS-FGSIS-RVKVMQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQRH 370
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CHAGB (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Chaetomium globosum GN=PAB1 PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 44/161 (27.33%), Postives = 79/161 (49.07%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKK 488 G ++ ++ + + G ++ + FV + E A A+ + ++ + + V + KK R + A T +YV N+S + R+ F A + V+S + +EG+S G+GFV+F T E A A+ L+GKE G+ L + QK + E +K Sbjct: 177 GNILSCKVAQDENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIP-KKDRQSKFEEMKANFTN--IYVKNISLEATDEEFRDLF-AKYGDVTSSSLARDSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRK 333
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_PONAB (Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 +++ +++ GK++ +AF+ AS E+A+ A+N + +E+ GR IR+E + PR +A + +T L+V LS L+E F + V +++V G S G+GFV F ++E+A+ A +++ E+ G + L + + Sbjct: 514 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 648
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_MACFA (Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 +++ +++ GK++ +AF+ AS E+A+ A+N + +E+ GR IR+E + PR +A + +T L+V LS L+E F + V +++V G S G+GFV F ++E+A+ A +++ E+ G + L + + Sbjct: 513 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 647
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_HUMAN (Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3) HSP 1 Score: 69.3218 bits (168), Expect = 1.078e-11 Identity = 42/145 (28.97%), Postives = 81/145 (55.86%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 +++ +++ GK++ +AF+ AS E+A+ A+N + +E+ GR IR+E + PR +A + +T L+V LS L+E F + V +++V G S G+GFV F ++E+A+ A +++ E+ G + L + + Sbjct: 512 IKVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFDGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 1.839e-11 Identity = 46/161 (28.57%), Postives = 78/161 (48.45%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFA-KKFKKPRPQRSASAPARETQH------KLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDD 467 G +V + I + + R +AFV +PE+A+ A + + + + V A KK ++ + R E Q +YV N++ V LR+ FS ++S + +G+S G+GFV F+T EEA A+ + G+ G+PL + QK +D Sbjct: 225 GKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRKHFS-QCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKED 384
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_YEAST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Saccharomyces cerevisiae GN=PAB1 PE=1 SV=4) HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 48/160 (30.00%), Postives = 74/160 (46.25%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G +V + + GK + F FV E+A AV + E++G + V A+K KK A+ L+V NL V L E F A + ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+ D Sbjct: 243 GPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKLEEEF-APYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 401
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_CANGA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida glabrata GN=PAB1 PE=3 SV=1) HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 46/160 (28.75%), Postives = 74/160 (46.25%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKK-------FKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKND 464 G V + R G+N+ F FV + E+A V + + E G+ + V A+K KK A+ L++ NL + L E F A + ++S V + G+S G+GFV F+T EEA AI+ + + + G+PL + Q+ D Sbjct: 240 GKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEF-APYGTITSAKVMTTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKD 398
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: NUCL_MESAU (Nucleolin OS=Mesocricetus auratus GN=NCL PE=1 SV=2) HSP 1 Score: 68.1662 bits (165), Expect = 2.401e-11 Identity = 42/145 (28.97%), Postives = 80/145 (55.17%), Query Frame = 3 Query: 21 VEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQ 455 +++ +++ GK++ +AF+ AS E+A+ A+N + E+ GR IR+E + PR +A + +T L+V LS L+E F + V +++V G S G+GFV F ++E+A+ A +++ E+ G + L + + Sbjct: 512 IKVPQNQQGKSKGYAFIEFASFEDAKEALNSCNKMEIEGRTIRLE----LQGPRGSPNARSQPSKT---LFVKGLSEDTTEETLKESFEGS---VRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAK 646
BLAST of CX306383 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 3.136e-11 Identity = 45/161 (27.95%), Postives = 78/161 (48.45%), Query Frame = 3 Query: 6 GTVVDVEIIRHKGGKNRNFAFVTMASPEEAQAAVNQFDTQEVSGRIIRVEFAKKFKKPRPQRSASAPARETQHKLYVSNLSWKVRSTHLREFFSANFNPVSSKVVFASNEGRSAGYGFVSFATKEEAEVAISSLDGKELMGRPLRLKFGQKNDDVSESNKK 488 G ++ ++ + + G ++ + FV + E A A+ + ++ + + V KK R + A T +YV N++ +V RE F A F V+S + EG+S G+GFV+F T E A A+ L+GK+ G+ L + QK + E +K Sbjct: 172 GNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIP-KKDRQSKFEEMKANFTN--VYVKNINNEVTDEEFRELF-AKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRK 328 The following BLAST results are available for this feature:
BLAST of CX306383 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
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Sequences
The
following sequences are available for this feature:
EST sequence >CX306383 ID=CX306383; Name=CX306383; organism=Citrus clementina; type=EST; length=499bpback to top |