CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_EMENI (Ubiquitin-conjugating enzyme E2 2 OS=Emericella nidulans GN=uvsJ PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 7.214e-15
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  185 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 433
            P KPP V F +++FHPN+   G +CLDIL+  WSP   ++ +L SI SLL DPN   P   E +++Y+ +R +Y     ET  +SW +
Sbjct:   64 PNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYRDNRKEYIKRVRETVEKSWEE 151          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_CRYNE (Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus neoformans GN=UBC2 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 9.422e-15
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSW 433
            P KPP V F +K+FHPNI + G +CLDIL+  WSP   ++ +L S+ SLL DPNP  P   + A ++K +  +YE     T   SW
Sbjct:   64 PNKPPTVRFISKMFHPNIYANGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNPASPANVDAAQLFKENLKEYERRVKKTVELSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.231e-14
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -2
Query:  197 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR 433
            P +PPKV   T+V+HPNI+  G++CL+IL+E W+P L I+ ++  +  L  +PNP+DPL  E A + +T+R ++E   +
Sbjct:   84 PHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVK 162          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_KLULA (Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces lactis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.607e-14
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+ + G ICLDIL+  W+P   ++ +L SI SL  DPNP  P   E A +++  +++Y     ET  +SW
Sbjct:   64 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFQDHKSQYVKRVKETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_NEUCR (Ubiquitin-conjugating enzyme E2 2 OS=Neurospora crassa GN=mus-8 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 2.099e-14
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+ + G +CLDIL+  WSP   ++ VL SI SLL DPN       E +++YK +R +Y     ET  +SW
Sbjct:   64 PNKPPSVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSRANVEASNLYKDNRKEYHKRVRETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_DICDI (Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium discoideum GN=ubc2 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.741e-14
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 433
            P   P V F +K+FHPN+ + GSICLDIL+  WSP   I+ +L SI SLL DPNP+ P   E A +++ ++ +Y     E   +SW+
Sbjct:   64 PNDAPTVKFLSKMFHPNVYADGSICLDILQNQWSPIYDIAAILTSIQSLLCDPNPNSPANSESARLFRENKREYNRKVKEIVEQSWS 150          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC4_ARATH (Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis thaliana GN=UBC4 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.580e-14
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = -2
Query:  161 PFKPPKVAFRTKVFHPNINS-KGSICLDILKE*WSPALTISKVLPSIC-SLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EG 433
            P+K P V F TK++HPN++   GS+CLD++ + WSP   +  V  +    LL  PNP DPL  E A +   DR  YE   + + +KYA   EG
Sbjct:   60 PYKSPSVGFITKIYHPNVDELSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPAYEQRVKEYCEKYAKPGEG 152          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P  PPKV   T V+HPNI+ +G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P  PPKV   T V+HPNI+ +G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.676e-14
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P  PPKV   T V+HPNI+ +G++CL+IL+E W P LTI+ ++  +  L  +PNP+DPL  E A + + +R  +E
Sbjct:   87 PHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFE 161          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC2_EMENI7.214e-1542.05Ubiquitin-conjugating enzyme E2 2 OS=Emericella ni... [more]
UBC2_CRYNE9.422e-1544.19Ubiquitin-conjugating enzyme E2 2 OS=Cryptococcus ... [more]
UBC12_DROME1.231e-1441.77NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC2_KLULA1.607e-1441.86Ubiquitin-conjugating enzyme E2 2 OS=Kluyveromyces... [more]
UBC2_NEUCR2.099e-1444.19Ubiquitin-conjugating enzyme E2 2 OS=Neurospora cr... [more]
UBC2_DICDI2.741e-1443.68Ubiquitin-conjugating enzyme E2 2 OS=Dictyostelium... [more]
UBC4_ARATH3.580e-1440.86Ubiquitin-conjugating enzyme E2 4 OS=Arabidopsis t... [more]
UBC12_XENTR4.676e-1444.00NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA4.676e-1444.00NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE4.676e-1444.00NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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