CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 33/88 (37.50%), Postives = 52/88 (59.09%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNIN-SKGSICLDILKE*WSPALTISKVLPS-ICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFK P + F  K+FHPNI+ + G++CLD++ + W+    ++ +  S +  LL  PNP DPL  + A MY     +Y+   + + QKYA
Sbjct:   62 PFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYA 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  218 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRA 433
            P+  P V F T  FHPN++S G+ICLDILK+ WS    +  +L S+ SLL +PN + PL P  A +++   A
Sbjct:   90 PYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTA 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBCX_DICDI (Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostelium discoideum GN=pex4 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 36/87 (41.38%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  179 PFKPPKVAFRTKVFHPNINSK-GSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAK-YETTARSWTQKY 433
            P +PP + F TK+FHPNI+ K G ICLD+LK  WS   T+  V  SI +LL+ P  D PL  +  ++ +    K +++ AR +T+ Y
Sbjct:   61 PLQPPTIKFVTKIFHPNIHFKTGEICLDLLKTSWSAIYTLQSVCRSIIALLSLPEADSPLNCDAGNLIRNGDVKGHDSLARMYTRLY 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC9_CAEEL (SUMO-conjugating enzyme UBC9 OS=Caenorhabditis elegans GN=ubc-9 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 34/88 (38.64%), Postives = 49/88 (55.68%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*--WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            P  PPK  F   +FHPN+   G++CL +L E   W P+++I ++L  I  LL  PN +DP   E   +Y  +RA+YE   +    KYA
Sbjct:   69 PSTPPKCKFEPPLFHPNVYPSGTVCLSLLDENKDWKPSISIKQLLIGIQDLLNHPNIEDPAQAEAYQIYCQNRAEYEKRVKKEAVKYA 156          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC11_SCHPO (Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosaccharomyces pombe GN=ubc11 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 9.751e-12
Identity = 29/75 (38.67%), Postives = 47/75 (62.67%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P+ PP + F + ++HPN++  G+ICLDILK+ WS    +  +L S+ SLL +PN   PL  + A ++  D  +Y+
Sbjct:   89 PYSPPTIIFTSPMWHPNVDMSGNICLDILKDKWSAVYNVQTILLSLQSLLGEPNNASPLNAQAAELWSKDPIEYK 163          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  218 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRA 433
            P+  P V F T  +HPN++++G+ICLDILK+ WS    +  +L SI SLL +PN D PL    A ++K   A
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2C_MACFA (Ubiquitin-conjugating enzyme E2 C OS=Macaca fascicularis GN=UBE2C PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  218 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRA 433
            P+  P V F T  +HPN++++G+ICLDILK+ WS    +  +L SI SLL +PN D PL    A ++K   A
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 32/72 (44.44%), Postives = 45/72 (62.50%), Query Frame = -2
Query:  218 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRA 433
            P+  P V F T  +HPN++++G+ICLDILK+ WS    +  +L SI SLL +PN D PL    A ++K   A
Sbjct:   90 PYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC19_ARATH (Ubiquitin carrier protein E2 19 OS=Arabidopsis thaliana GN=UBC19 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.273e-11
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = -2
Query:  233 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMY 433
            PFK PKV F T  FHPN++  G+ICLDIL++ WS A  +  +L SI SLL +PN   PL  + A ++
Sbjct:   96 PFKSPKVKFETCCFHPNVDLYGNICLDILQDKWSSAYDVRTILLSIQSLLGEPNISSPLNNQAAQLW 162          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.663e-11
Identity = 36/86 (41.86%), Postives = 46/86 (53.49%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            P  PPK  F TK+FHPN+ S G IC++ LK+ W P L I  +L +I  LL  PNP+  L  E   M       Y   AR  T+ +A
Sbjct:   74 PQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTEIHA 159          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBE2H_BOVIN9.751e-1237.50Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBE2C_XENLA9.751e-1244.44Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBCX_DICDI9.751e-1241.38Ubiquitin-conjugating enzyme E2 pex4 OS=Dictyostel... [more]
UBC9_CAEEL9.751e-1238.64SUMO-conjugating enzyme UBC9 OS=Caenorhabditis ele... [more]
UBC11_SCHPO9.751e-1238.67Ubiquitin-conjugating enzyme E2-20 kDa OS=Schizosa... [more]
UBE2C_MOUSE1.273e-1144.44Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]
UBE2C_MACFA1.273e-1144.44Ubiquitin-conjugating enzyme E2 C OS=Macaca fascic... [more]
UBE2C_BOVIN1.273e-1144.44Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBC19_ARATH1.273e-1149.25Ubiquitin carrier protein E2 19 OS=Arabidopsis tha... [more]
UBE2S_DROVI1.663e-1141.86Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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