CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_CAEEL (Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 4.347e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR +Y   AR WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBCD1_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=eff PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   AR WT+KYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNELAREWTRKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_RAT (Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_PONAB (Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_MOUSE (Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus GN=Ube2d3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_MACFA (Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fascicularis GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_HUMAN (Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens GN=UBE2D3 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D2_PIG (Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 5.677e-36
Identity = 69/87 (79.31%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS GSICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC4_CANAL (Ubiquitin-conjugating enzyme E2 4 OS=Candida albicans GN=UBC4 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.265e-35
Identity = 67/87 (77.01%), Postives = 76/87 (87.36%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            P KPPK+A  TK++HPNINS G+ICLDILK+ WSPALTISKVL SICSLLTD NPDDPLVPEIAH+YK DR KYE TA+ WT+KYA+
Sbjct:   61 PLKPPKIALTTKIYHPNINSNGNICLDILKDQWSPALTISKVLLSICSLLTDANPDDPLVPEIAHIYKQDRKKYEATAKEWTKKYAV 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D1_MOUSE (Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus GN=Ube2d1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.817e-35
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPK+AF TK++HPNINS GSICLDIL+  WSPALT+SKVL SICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC2_CAEEL4.347e-3679.31Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditi... [more]
UBCD1_DROME5.677e-3679.31Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UB2D3_RAT5.677e-3679.31Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norve... [more]
UB2D3_PONAB5.677e-3679.31Ubiquitin-conjugating enzyme E2 D3 OS=Pongo abelii... [more]
UB2D3_MOUSE5.677e-3679.31Ubiquitin-conjugating enzyme E2 D3 OS=Mus musculus... [more]
UB2D3_MACFA5.677e-3679.31Ubiquitin-conjugating enzyme E2 D3 OS=Macaca fasci... [more]
UB2D3_HUMAN5.677e-3679.31Ubiquitin-conjugating enzyme E2 D3 OS=Homo sapiens... [more]
UB2D2_PIG5.677e-3679.31Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa G... [more]
UBC4_CANAL1.265e-3577.01Ubiquitin-conjugating enzyme E2 4 OS=Candida albic... [more]
UB2D1_MOUSE2.817e-3575.86Ubiquitin-conjugating enzyme E2 D1 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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