CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D1_HUMAN (Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens GN=UBE2D1 PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.817e-35
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPK+AF TK++HPNINS GSICLDIL+  WSPALT+SKVL SICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D1_BOVIN (Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus GN=UBE2D1 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 2.817e-35
Identity = 66/87 (75.86%), Postives = 75/87 (86.21%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPK+AF TK++HPNINS GSICLDIL+  WSPALT+SKVL SICSLL DPNPDDPLVP+IA +YK+D+ KY   AR WTQKYAM
Sbjct:   61 PFKPPKIAFTTKIYHPNINSNGSICLDILRSQWSPALTVSKVLLSICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2D3_BOVIN (Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus GN=UBE2D3 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.680e-35
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKVAF T+++HPNINS  SICLDIL+  WSPALTISKVL SICSLL DPNPDDPLVPEIA +YKTDR KY   +R WTQKYAM
Sbjct:   61 PFKPPKVAFTTRIYHPNINSNDSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRDKYNRISREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: U2D2B_RAT (Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.680e-35
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKV F T+++HPN+NS GSICLDIL+  WSPALTISKVL SI SLL DPNPDDPLVPEIA +YKTDR KY  TAR WTQKYAM
Sbjct:   61 PFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: U2D2B_MOUSE (Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 3.680e-35
Identity = 68/87 (78.16%), Postives = 74/87 (85.06%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            PFKPPKV F T+++HPN+NS GSICLDIL+  WSPALTISKVL SI SLL DPNPDDPLVPEIA +YKTDR KY  TAR WTQKYAM
Sbjct:   61 PFKPPKVEFTTRIYHPNVNSNGSICLDILRSQWSPALTISKVLLSISSLLCDPNPDDPLVPEIAQIYKTDRDKYNRTAREWTQKYAM 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFKPPKV FRT+++H NINS+G ICLDILK+ WSPALTISKVL SICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:  115 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2E2_HUMAN (Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens GN=UBE2E2 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFKPPKV FRT+++H NINS+G ICLDILK+ WSPALTISKVL SICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:  115 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 200          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFKPPKV FRT+++H NINS+G ICLDILK+ WSPALTISKVL SICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:  107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 3.017e-29
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFKPPKV FRT+++H NINS+G ICLDILK+ WSPALTISKVL SICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:  107 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYA 192          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 3.940e-29
Identity = 60/86 (69.77%), Postives = 71/86 (82.56%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PFKPPKV FRT+++H NINS+G ICLDILK+ WSPALTISKVL SICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:  121 PFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UB2D1_HUMAN2.817e-3575.86Ubiquitin-conjugating enzyme E2 D1 OS=Homo sapiens... [more]
UB2D1_BOVIN2.817e-3575.86Ubiquitin-conjugating enzyme E2 D1 OS=Bos taurus G... [more]
UB2D3_BOVIN3.680e-3578.16Ubiquitin-conjugating enzyme E2 D3 OS=Bos taurus G... [more]
U2D2B_RAT3.680e-3578.16Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norv... [more]
U2D2B_MOUSE3.680e-3578.16Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculu... [more]
UB2E2_MOUSE3.017e-2969.77Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]
UB2E2_HUMAN3.017e-2969.77Ubiquitin-conjugating enzyme E2 E2 OS=Homo sapiens... [more]
UB2E1_MOUSE3.017e-2969.77Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UB2E1_HUMAN3.017e-2969.77Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UB2E3_MOUSE3.940e-2969.77Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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