CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:259..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC13_SCHPO (Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccharomyces pombe GN=ubc13 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 6.306e-19
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  173 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 433
            P  PP V F TK++HPN++  G ICL  LK+ WSPAL I  VL SI +L+  PNPDDPL  ++A ++K +  +    AR WT+KYA+
Sbjct:   62 PMMPPNVRFLTKIYHPNVDKLGRICLSTLKKDWSPALQIRTVLLSIQALMGAPNPDDPLDNDVAKIWKENEPQAIANAREWTKKYAV 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 8.235e-19
Identity = 45/87 (51.72%), Postives = 61/87 (70.11%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSK-GSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF+PPK+ F TKV+HPNI+S+ G+ICLDILK+ WSPALT+   L SI +LL+ P P DP    +A  Y  +   + +TAR WT+ +A
Sbjct:   63 PFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKNYQVFVSTARYWTETFA 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC37_ARATH (Probable ubiquitin carrier protein E2 37 OS=Arabidopsis thaliana GN=UBC37 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.405e-18
Identity = 45/90 (50.00%), Postives = 62/90 (68.89%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDIL----KE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF+PP V+F T ++HPNI++ G ICLDIL    K  W P+L IS VL S+  LL++PNPDD L+ E++  YK +R  ++  AR  T+KYA
Sbjct:   75 PFQPPIVSFATPIYHPNIDNSGRICLDILNLPPKGAWQPSLNISTVLTSMRLLLSEPNPDDGLMCEVSREYKYNRQTFDYKAREMTEKYA 164          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC1_SCHPO (Ubiquitin-conjugating enzyme E2 1 OS=Schizosaccharomyces pombe GN=ubc1 PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.396e-18
Identity = 42/93 (45.16%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  158 PFKPPKVAFRTKVFHPNINSK-GSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG*EGL 433
            PF+PPK+ F TK++HPN++S+ G+ICLDILK+ WSP  T+   L S+ SLL  P P +P   ++A +Y  +  ++  TAR WT  YA    G+
Sbjct:   64 PFRPPKMNFDTKIYHPNVSSQTGAICLDILKDQWSPVYTMKSALISLQSLLCTPEPSNPQDAQVAQVYLQNYQQFVRTAREWTSSYAAAPAGV 156          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2L3_PONAB (Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  179 PFKPPKVAFRTKVFHPNINSKGSICLDILK-E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 433
            PFKPPK+ F+TK++HPNI+ KG +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2L3_MOUSE (Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus GN=Ube2l3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  179 PFKPPKVAFRTKVFHPNINSKGSICLDILK-E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 433
            PFKPPK+ F+TK++HPNI+ KG +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2L3_HUMAN (Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens GN=UBE2L3 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  179 PFKPPKVAFRTKVFHPNINSKGSICLDILK-E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 433
            PFKPPK+ F+TK++HPNI+ KG +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UB2L3_BOVIN (Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus GN=UBE2L3 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.087e-18
Identity = 38/86 (44.19%), Postives = 57/86 (66.28%), Query Frame = -2
Query:  179 PFKPPKVAFRTKVFHPNINSKGSICLDILK-E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKY 433
            PFKPPK+ F+TK++HPNI+ KG +CL ++  E W PA    +V+ S+ +L+ DP P+ PL  ++A  Y  DR K+   A  +T+KY
Sbjct:   62 PFKPPKITFKTKIYHPNIDEKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2T_MOUSE (Ubiquitin-conjugating enzyme E2 T OS=Mus musculus GN=Ube2t PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 42/90 (46.67%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILK----E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF+PP+V F T ++HPNI+S G ICLDILK      W P+L I+ VL SI  L+ +PNPDDPL+ +I+  +K ++  +   A+ WT+ +A
Sbjct:   62 PFEPPQVRFLTPIYHPNIDSSGRICLDILKLPPKGAWRPSLNIATVLTSIQLLMAEPNPDDPLMADISSEFKYNKIAFLKKAKQWTEAHA 151          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2T_BOVIN (Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN=UBE2T PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 40/90 (44.44%), Postives = 61/90 (67.78%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILK----E*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF+PP++ F T ++HPNI+S G ICLD+LK      W P+L I+ +L  I  L+ +PNPDDPL+ +I+  +K ++  +   AR WT+K+A
Sbjct:   62 PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATLLTCIQQLMAEPNPDDPLMADISSEFKYNKPVFFKNARQWTEKHA 151          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC13_SCHPO6.306e-1949.43Ubiquitin-conjugating enzyme E2 13 OS=Schizosaccha... [more]
UBC27_ARATH8.235e-1951.72Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBC37_ARATH1.405e-1850.00Probable ubiquitin carrier protein E2 37 OS=Arabid... [more]
UBC1_SCHPO2.396e-1845.16Ubiquitin-conjugating enzyme E2 1 OS=Schizosacchar... [more]
UB2L3_PONAB4.087e-1844.19Ubiquitin-conjugating enzyme E2 L3 OS=Pongo abelii... [more]
UB2L3_MOUSE4.087e-1844.19Ubiquitin-conjugating enzyme E2 L3 OS=Mus musculus... [more]
UB2L3_HUMAN4.087e-1844.19Ubiquitin-conjugating enzyme E2 L3 OS=Homo sapiens... [more]
UB2L3_BOVIN4.087e-1844.19Ubiquitin-conjugating enzyme E2 L3 OS=Bos taurus G... [more]
UBE2T_MOUSE5.338e-1846.67Ubiquitin-conjugating enzyme E2 T OS=Mus musculus ... [more]
UBE2T_BOVIN5.338e-1844.44Ubiquitin-conjugating enzyme E2 T OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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