CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:259..692. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*-WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF+PP + F T+++HPN +S+G++CL ILK+  + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ DR  ++  AR + +++A
Sbjct:   67 PFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 5.338e-18
Identity = 43/86 (50.00%), Postives = 56/86 (65.12%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            P + PKV F TK++HPNI+  G ICLD+LK  WSPAL I  VL SI +LL  PNP+DPL  ++A  +  +    +  AR WT+ YA
Sbjct:   63 PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYA 148          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2K_MOUSE (Ubiquitin-conjugating enzyme E2 K OS=Mus musculus GN=Ube2k PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINS-KGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF PPKV F TK++HPNI+S  G+ICLDILK+ W+ A+T+  VL S+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   67 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2K_HUMAN (Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens GN=UBE2K PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINS-KGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF PPKV F TK++HPNI+S  G+ICLDILK+ W+ A+T+  VL S+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   67 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2K_BOVIN (Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN=UBE2K PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.649e-17
Identity = 43/87 (49.43%), Postives = 58/87 (66.67%), Query Frame = -2
Query:  176 PFKPPKVAFRTKVFHPNINS-KGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 433
            PF PPKV F TK++HPNI+S  G+ICLDILK+ W+ A+T+  VL S+ +LL    PDDP    +A+ YK +   ++ TAR W   YA
Sbjct:   67 PFNPPKVRFITKIWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYA 153          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBCD6_DROME (Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophila melanogaster GN=UbcD6 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 3.460e-17
Identity = 40/84 (47.62%), Postives = 55/84 (65.48%), Query Frame = -2
Query:  182 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQK 433
            P KPP V F +KVFHPN+ + G ICLDIL+  WSP   +S +L SI SLL+DPNP+ P     A +YK +R +YE   ++  ++
Sbjct:   64 PNKPPTVRFVSKVFHPNVYADGGICLDILQNRWSPTYDVSAILTSIQSLLSDPNPNSPANSTAAQLYKENRREYEKRVKACVEQ 147          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_WHEAT (Ubiquitin-conjugating enzyme E2 2 OS=Triticum aestivum GN=UBC2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.007e-16
Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 433
            P KPP V F +++FHPNI + GSICLDIL+  WSP   ++ +L SI SLL DPNP+ P   E A MY  ++ +Y     E   +SWT
Sbjct:   64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSENKREYNRKVREVVEQSWT 150          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.717e-16
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = -2
Query:  170 PFKPPKVAFRTKVFHPNINS-KGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 433
            PF PPKV F T+++HPNI+S  G+ICLDILK+ W+ A+T+  VL S+ +LL    PDDP    +A+ +K     +  TA+ WT  YA G
Sbjct:   67 PFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKDKYDLFLLTAKHWTNAYAGG 155          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.243e-16
Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTAR-----SWT 433
            P KPP V F +++FHPNI + GSICLDIL+  WSP   ++ +L SI SLL DPNP+ P   E A MY   + +Y    R     SWT
Sbjct:   64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT 150          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_MEDSA (Ubiquitin-conjugating enzyme E2 2 OS=Medicago sativa GN=UBC2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.929e-16
Identity = 41/87 (47.13%), Postives = 55/87 (63.22%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 433
            P KPP V F +++FHPNI + GSICLDIL+  WSP   ++ +L SI SLL DPNP+ P   E A M+  ++ +Y     E   +SWT
Sbjct:   64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREVVEQSWT 150          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC14_SCHPO5.338e-1843.68Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC13_YEAST5.338e-1850.00Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2K_MOUSE2.649e-1749.43Ubiquitin-conjugating enzyme E2 K OS=Mus musculus ... [more]
UBE2K_HUMAN2.649e-1749.43Ubiquitin-conjugating enzyme E2 K OS=Homo sapiens ... [more]
UBE2K_BOVIN2.649e-1749.43Ubiquitin-conjugating enzyme E2 K OS=Bos taurus GN... [more]
UBCD6_DROME3.460e-1747.62Ubiquitin-conjugating enzyme E2-17 kDa OS=Drosophi... [more]
UBC2_WHEAT1.007e-1648.28Ubiquitin-conjugating enzyme E2 2 OS=Triticum aest... [more]
UBCD4_DROME1.717e-1647.19Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC1_ARATH2.243e-1648.28Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UBC2_MEDSA2.929e-1647.13Ubiquitin-conjugating enzyme E2 2 OS=Medicago sati... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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