CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2B_RAT (Ubiquitin-conjugating enzyme E2 B OS=Rattus norvegicus GN=Ube2b PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2B_RABIT (Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus cuniculus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2B_MOUSE (Ubiquitin-conjugating enzyme E2 B OS=Mus musculus GN=Ube2b PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2B_HUMAN (Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens GN=UBE2B PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2B_BOVIN (Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN=UBE2B PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFLSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_DEBHA (Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces hansenii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 40/88 (45.45%), Postives = 54/88 (61.36%), Query Frame = -2
Query:  185 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWTQ 433
            P KPP V F +++FHPN+ + G +CLDIL+  WSP   +S +L SI SLL DPN   P   E A++YK  R++Y     ET   SW +
Sbjct:   64 PNKPPSVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSIQSLLNDPNISSPANVEAANLYKDHRSQYIKRVRETVENSWNE 151          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_ARATH (Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis thaliana GN=UBC2 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.825e-16
Identity = 41/87 (47.13%), Postives = 54/87 (62.07%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSWT 433
            P KPP V F +++FHPNI + GSICLDIL+  WSP   ++ +L SI SLL DPNP+ P   E A M+   + +Y     E   +SWT
Sbjct:   64 PNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSESKREYNRRVREVVEQSWT 150          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2A_MOUSE (Ubiquitin-conjugating enzyme E2 A OS=Mus musculus GN=Ube2a PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBE2A_HUMAN (Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens GN=UBE2A PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 37/75 (49.33%), Postives = 52/75 (69.33%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   +S +L SI SLL +PNP+ P   + A +Y+ ++ +YE
Sbjct:   64 PNKPPTVRFVSKMFHPNVYADGSICLDILQNRWSPTYDVSSILTSIQSLLDEPNPNSPANSQAAQLYQENKREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_TRIHA (Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma harzianum GN=UBC2 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.996e-16
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP+V F +++FHPN+ + G +CLDIL+  WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  RSW
Sbjct:   64 PNKPPQVKFISQMFHPNVYANGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRREYIKRVRETVERSW 149          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBE2B_RAT3.825e-1649.33Ubiquitin-conjugating enzyme E2 B OS=Rattus norveg... [more]
UBE2B_RABIT3.825e-1649.33Ubiquitin-conjugating enzyme E2 B OS=Oryctolagus c... [more]
UBE2B_MOUSE3.825e-1649.33Ubiquitin-conjugating enzyme E2 B OS=Mus musculus ... [more]
UBE2B_HUMAN3.825e-1649.33Ubiquitin-conjugating enzyme E2 B OS=Homo sapiens ... [more]
UBE2B_BOVIN3.825e-1649.33Ubiquitin-conjugating enzyme E2 B OS=Bos taurus GN... [more]
UBC2_DEBHA3.825e-1645.45Ubiquitin-conjugating enzyme E2 2 OS=Debaryomyces ... [more]
UBC2_ARATH3.825e-1647.13Ubiquitin-conjugating enzyme E2 2 OS=Arabidopsis t... [more]
UBE2A_MOUSE4.996e-1649.33Ubiquitin-conjugating enzyme E2 A OS=Mus musculus ... [more]
UBE2A_HUMAN4.996e-1649.33Ubiquitin-conjugating enzyme E2 A OS=Homo sapiens ... [more]
UBC2_TRIHA4.996e-1646.51Ubiquitin-conjugating enzyme E2 2 OS=Trichoderma h... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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