CX306398

Overview
NameCX306398
Unique NameCX306398
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length434
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_NECHA (Ubiquitin-conjugating enzyme E2 2 OS=Nectria haematococca GN=UBC2 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP+V F +++FHPN+ + G +CLDIL+  WSP   ++ VL SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   64 PNKPPQVKFISEMFHPNVYATGELCLDILQNRWSPTYDVAAVLTSIQSLLNDPNTGSPANVEASNLYKDNRKEYTKRVRETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_CANAL (Ubiquitin-conjugating enzyme E2 2 OS=Candida albicans GN=UBC2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.454e-15
Identity = 39/86 (45.35%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP+V F +++FHPN+ + G +CLDIL+  WSP   +S +L S+ SLL DPN   P   E A++YK  R+ Y     ET   SW
Sbjct:   64 PNKPPQVKFISEMFHPNVYASGELCLDILQNRWSPTYDVSSILTSVQSLLNDPNISSPANVEAANLYKDHRSLYVKRVRETVENSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC3_ARATH (Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis thaliana GN=UBC3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 38/74 (51.35%), Postives = 50/74 (67.57%), Query Frame = -2
Query:  212 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY 433
            P KPP V F +++FHPNI + GSICLDIL+  WSP   ++ VL SI SLL DPNPD P   E A ++  ++ +Y
Sbjct:   64 PNKPPIVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAVLTSIQSLLCDPNPDSPANAEAARLFSENKREY 137          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_YARLI (Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipolytica GN=UBC2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 39/87 (44.83%), Postives = 52/87 (59.77%), Query Frame = -2
Query:  188 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE-----TTARSWT 433
            P KPP V F +++FHPN+ S G +CLDIL+  WSP   ++ +L S+ SLL DPN   P   E + +YK  R +YE     T   SWT
Sbjct:   64 PNKPPAVKFVSQMFHPNVYSSGELCLDILQNRWSPTYDVAAILTSVQSLLNDPNTSSPANVEASMLYKDHRQQYEKRVRDTVEASWT 150          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC1_CAEEL (Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditis elegans GN=ubc-1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.480e-15
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = -2
Query:  209 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKYE 433
            P KPP V F +K+FHPN+ + GSICLDIL+  WSP   ++ +L SI SLL +PNP+ P     A +Y+ +R +YE
Sbjct:   64 PNKPPTVKFISKMFHPNVYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYE 138          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_ASPFU (Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus fumigatus GN=ubc2 PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 4.230e-15
Identity = 38/86 (44.19%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+   G +CLDIL+  WSP   ++ +L SI SLL DPN   P   E +++YK +R +Y     ET  +SW
Sbjct:   64 PNKPPGVKFISQMFHPNVYGTGELCLDILQNRWSPTYDVAAILTSIQSLLNDPNTSSPANVEASNLYKDNRKEYIKRVRETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_YEAST (Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces cerevisiae GN=RAD6 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+ + G ICLDIL+  W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   64 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_USTMA (Ubiquitin-conjugating enzyme E2 2 OS=Ustilago maydis GN=UBC2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15
Identity = 38/86 (44.19%), Postives = 52/86 (60.47%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +K+FHPN+ + G +CLDIL+  WSP   ++ +L SI SLL DPNP+ P   E A +Y+ +  +Y      T   SW
Sbjct:   64 PNKPPTVKFLSKMFHPNVYANGELCLDILQNRWSPTYDVAAILTSIQSLLHDPNPNSPANAEAASLYRENMKEYVRRVKATVEASW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_CANGA (Ubiquitin-conjugating enzyme E2 2 OS=Candida glabrata GN=UBC2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+ + G ICLDIL+  W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   64 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYIKRVKETVEKSW 149          
BLAST of CX306398 vs. ExPASy Swiss-Prot
Match: UBC2_ASHGO (Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossypii GN=UBC2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.524e-15
Identity = 37/86 (43.02%), Postives = 53/86 (61.63%), Query Frame = -2
Query:  191 PFKPPKVAFRTKVFHPNINSKGSICLDILKE*WSPALTISKVLPSICSLLTDPNPDDPLVPEIAHMYKTDRAKY-----ETTARSW 433
            P KPP V F +++FHPN+ + G ICLDIL+  W+P   ++ +L SI SL  DPNP  P   E A ++K  +++Y     ET  +SW
Sbjct:   64 PNKPPHVKFLSEMFHPNVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW 149          
The following BLAST results are available for this feature:
BLAST of CX306398 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 182
Match NameE-valueIdentityDescription
UBC2_NECHA1.454e-1545.35Ubiquitin-conjugating enzyme E2 2 OS=Nectria haema... [more]
UBC2_CANAL1.454e-1545.35Ubiquitin-conjugating enzyme E2 2 OS=Candida albic... [more]
UBC3_ARATH2.480e-1551.35Ubiquitin-conjugating enzyme E2 3 OS=Arabidopsis t... [more]
UBC2_YARLI2.480e-1544.83Ubiquitin-conjugating enzyme E2 2 OS=Yarrowia lipo... [more]
UBC1_CAEEL2.480e-1549.33Ubiquitin-conjugating enzyme E2 1 OS=Caenorhabditi... [more]
UBC2_ASPFU4.230e-1544.19Ubiquitin-conjugating enzyme E2 2 OS=Aspergillus f... [more]
UBC2_YEAST5.524e-1543.02Ubiquitin-conjugating enzyme E2 2 OS=Saccharomyces... [more]
UBC2_USTMA5.524e-1544.19Ubiquitin-conjugating enzyme E2 2 OS=Ustilago mayd... [more]
UBC2_CANGA5.524e-1543.02Ubiquitin-conjugating enzyme E2 2 OS=Candida glabr... [more]
UBC2_ASHGO5.524e-1543.02Ubiquitin-conjugating enzyme E2 2 OS=Ashbya gossyp... [more]

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Properties
Property NameValue
Genbank descriptionC18017F05Rv Drought1 Citrus clementina cDNA clone C18017F05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306398 ID=CX306398; Name=CX306398; organism=Citrus clementina; type=EST; length=434bp
TTTTTTTTTTTTTTTTTTTTGAAAGTAACCCCACATAAAACCTTTTAACA
ACTTAGTAAACAAAACCAAGTNTNGTCTTTTAATATCTGACACAAACTTA
TTTCTATTATTTACTAATAGGACCACAAGCCATTAATGTTCTCAGGGGCA
TACAGCCTAGCCCCTCTTAACCCATGGCATACTTCTGAGTCCAGGATCGA
GCAGTAGTCTCATATTTGGCTCTGTCAGTCTTGTACATGTGAGCAATCTC
AGGCACAAGTGGGTCATCTGGGTTCGGATCAGTAAGTAGTGAGCAAATTG
ACGGAAGTACCTTGGATATTGTCAAAGCAGGGCTCCACTACTCCTTGAGA
ATGTCAAGACAGATGCTACCTTTGCTGTTGATGTTAGGGTGGAAAACCTT
AGTACGGAAGGCCACCTTCGGGGGCTTGAATGGA
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