CX306401

Overview
NameCX306401
Unique NameCX306401
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length482
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX306401 vs. ExPASy Swiss-Prot
Match: NAC3_ARATH (NAC domain-containing protein 3 OS=Arabidopsis thaliana GN=NAC003 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.374e-11
Identity = 31/68 (45.59%), Postives = 41/68 (60.29%), Query Frame = 2 
Query:   68 WYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRHGLIGMRKTLVFYKGRAPNGQKSDWIMHEH 271
            W FF  K+ KY  G +  R TK+GFWK+TGR K I      IG +K L+FY  +     KSDW++HE+
Sbjct:   63 WCFFRPKENKYGRGDQQMRKTKSGFWKSTGRPKPIMRNRQQIGEKKILMFYTSKE---SKSDWVIHEY 127
[Close]
BLAST of CX306401 vs. ExPASy Swiss-Prot
Match: NAC5_ARATH (NAC domain-containing protein 5 OS=Arabidopsis thaliana GN=NAC005 PE=2 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 8.325e-11
Identity = 39/94 (41.49%), Postives = 50/94 (53.19%), Query Frame = 2 
Query:   68 WYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKAIYSRHG---LIGMRKTLVFYKGRAPNGQKSDWIMHEHRLETNENGTPQASITSLLNKMKF 340
            WYFF  K+ KY  G R  R TK+GFWK TG    I  + G    IG ++ LVF   +   G KSDW MHE+    +   +P   +T  L K+KF
Sbjct:   63 WYFFGRKENKYGKGDRQIRKTKSGFWKKTGVTMDIMRKTGDREKIGEKRVLVF---KNHGGSKSDWAMHEYHATFS---SPNQIMTYTLCKVKF 150
The following BLAST results are available for this feature:
BLAST of CX306401 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NAC3_ARATH6.374e-1145.59NAC domain-containing protein 3 OS=Arabidopsis tha... [more]
NAC5_ARATH8.325e-1141.49NAC domain-containing protein 5 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionC18017F08Rv Drought1 Citrus clementina cDNA clone C18017F08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306401 ID=CX306401; Name=CX306401; organism=Citrus clementina; type=EST; length=482bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTGGAGAATTGTGCAAAATAGGAA
GTGAAGAGCAGAATGAATGGTACTTCTTTAGCCATAAAGATAAGAAATAT
CCAACTGGAACTCGCACGAATAGAGCAACAAAAGCAGGATTTTGGAAAGC
CACAGGAAGAGACAAGGCCATTTACTCCAGGCATGGCCTTATTGGCATGA
GAAAAACCTTAGTGTTTTACAAAGGACGAGCTCCCAATGGACAAAAATCA
GATTGGATCATGCATGAACATCGTCTTGAAACTAATGAAAATGGCACTCC
TCAGGCAAGTATCACTTCTCTTCTTAATAAGATGAAATTTTTATTTACTT
TTAATTGCTACTGCTTTACCAAATGAAGAAACCATCTTTTTTTTTTTGCA
AGAATTGGTTCAAAAAATAAATTAGATAAAAATATCAAAACAATTTGCAT
ATTCAATAGGGAAAGCATTTAGTGAGACTCCC
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