CX306403

Overview
NameCX306403
Unique NameCX306403
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length466
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig887 contig Ccv1_Contig887:1..466. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.465e-33
Identity = 75/141 (53.19%), Postives = 92/141 (65.25%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL---------GSSSN---EVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MS+IPS FG+R  +VL+PFS D+W P          G+SS    E + FA+  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KN+KW RVE            PENA +D+VKA MENGVLTVT
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVT 141          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP15_SOYBN (17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 4.204e-33
Identity = 77/136 (56.62%), Postives = 86/136 (63.24%), Query Frame = 1
Query:   85 MSLIPSIFGN--RSVLDPFSSDVW-------APLGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPSIFG    +V DPFS D+W        P  S S E S F + +VDWKET EAHV KAD+PGL          D RVLQISGER+VEKEDKND W RV+            PENAK++QVKA MENGVLTVT
Sbjct:    1 MSLIPSIFGGPRSNVFDPFSLDMWDPFKDFHVPTSSVSAENSAFVNTRVDWKETQEAHVLKADIPGLKKEEVKVQIEDDRVLQISGERNVEKEDKNDTWHRVDRSSGKFMRRFRLPENAKVEQVKACMENGVLTVT 136          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 4.204e-33
Identity = 75/139 (53.96%), Postives = 91/139 (65.47%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL----------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPSIFG R  +V DPFS DV+ P            + + +V+ F +A+VDW+ETPEAHVFKADLPGL          DG +LQISGERS E E+KNDKW RVE            PENAK++++KASMENGVL+VT
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAPAMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVT 139          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS178_ARATH (17.8 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.8 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.491e-33
Identity = 77/137 (56.20%), Postives = 84/137 (61.31%), Query Frame = 1
Query:   85 MSLIPSIFGNR----SVLDPFSSDVWAPL------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPS FGN     S+ DPFS DVW P        S S E S   +A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRSNSIFDPFSLDVWDPFKELQFPSSLSGETSAITNARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMDQVKASMENGVLTVT 137          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 139.428 bits (350), Expect = 7.172e-33
Identity = 72/138 (52.17%), Postives = 89/138 (64.49%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAPL---------GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSL+PS FG R  +V DPFS DVW P           + + +V+ F +A+VDW+ETPEAHVFKAD+PGL          DG +LQISGERS E E+K+D W RVE            PENAK+++VKASMENGVL+VT
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAPAKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVT 138          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 7.172e-33
Identity = 75/139 (53.96%), Postives = 90/139 (64.75%), Query Frame = 1
Query:   85 MSLIPSIFGNR--SVLDPFSSDVWAP-----LGSSS-----NEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MS+IPS FG R  +V DPFS DVW P     L +SS      E + F +  +DWKETP+AHVFKADLPGL          +G+VLQISGER+ EKE+KNDKW RVE            PENAK+D+VKA+M NGV+TVT
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDFPLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVT 139          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS17B_ARATH (17.6 kDa class I heat shock protein 2 OS=Arabidopsis thaliana GN=HSP17.6B PE=2 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 9.366e-33
Identity = 75/135 (55.56%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   85 MSLIPSIFGNR---SVLDPFSSDVWAPL-----GSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MS+IPS F N    ++ DPFS DVW P       S S E S   +A+VDW+ETPEAHVFKADLPGL          +  VL+ISGER VEKEDKND W RVE            PEN K+DQVKA+MENGVLTVT
Sbjct:    1 MSMIPSFFNNNRRSNIFDPFSLDVWDPFKELTSSSLSRENSAIVNARVDWRETPEAHVFKADLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMDQVKAAMENGVLTVT 135          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS17A_ARATH (17.6 kDa class I heat shock protein 1 OS=Arabidopsis thaliana GN=HSP17.6A PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 2.725e-32
Identity = 76/135 (56.30%), Postives = 85/135 (62.96%), Query Frame = 1
Query:   85 MSLIPSIFGNR-----SVLDPFSSDVWAP---LGSSSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            MSLIPS FGN      ++ DPFS DVW P   L   S+  S  A+A+VDWKET EAHVFKADLPG+          D  VL+ISGER VEKE+K D W RVE            PEN K+DQVKASMENGVLTVT
Sbjct:    1 MSLIPSFFGNNRRINNNIFDPFSLDVWDPFKELQFPSSSSSAIANARVDWKETAEAHVFKADLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMDQVKASMENGVLTVT 135          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS16B_ORYSJ (16.9 kDa class I heat shock protein 2 OS=Oryza sativa subsp. japonica GN=HSP16.9B PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 4.648e-32
Identity = 70/131 (53.44%), Postives = 83/131 (63.36%), Query Frame = 1
Query:  100 SIFGNRSVLDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            S+    +V DPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA MENGVLTVT
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGMENGVLTVT 132          
BLAST of CX306403 vs. ExPASy Swiss-Prot
Match: HS16A_ORYSJ (16.9 kDa class I heat shock protein 1 OS=Oryza sativa subsp. japonica GN=HSP16.9A PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 1.036e-31
Identity = 69/131 (52.67%), Postives = 83/131 (63.36%), Query Frame = 1
Query:  100 SIFGNRSVLDPFSSDVWAPLGS---------SSNEVSTFASAQVDWKETPEAHVFKADLPGLXXXXXXXXXXDGRVLQISGERSVEKEDKNDKWRRVEXXXXXXXXXXXXPENAKIDQVKASMENGVLTVT 465
            S+    +V DPFS D+W P  S         S N+ + FA+A++DWKETPE+HVFKADLPG+          +G VL ISG+RS EKEDKNDKW RVE            PENAK+DQVKA +ENGVLTVT
Sbjct:    2 SLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVT 132          
The following BLAST results are available for this feature:
BLAST of CX306403 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
HSP12_DAUCA2.465e-3353.1918.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP15_SOYBN4.204e-3356.6217.6 kDa class I heat shock protein OS=Glycine max... [more]
HS17C_ARATH4.204e-3353.9617.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS178_ARATH5.491e-3356.2017.8 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP17_ARATH7.172e-3352.1717.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA7.172e-3353.9617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HS17B_ARATH9.366e-3355.5617.6 kDa class I heat shock protein 2 OS=Arabidops... [more]
HS17A_ARATH2.725e-3256.3017.6 kDa class I heat shock protein 1 OS=Arabidops... [more]
HS16B_ORYSJ4.648e-3253.4416.9 kDa class I heat shock protein 2 OS=Oryza sat... [more]
HS16A_ORYSJ1.036e-3152.6716.9 kDa class I heat shock protein 1 OS=Oryza sat... [more]

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Properties
Property NameValue
Genbank descriptionC18017F10Rv Drought1 Citrus clementina cDNA clone C18017F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306403 ID=CX306403; Name=CX306403; organism=Citrus clementina; type=EST; length=466bp
GCGGGATCGGTAAAGAGTGAAGACCCAATTGATAAATAAGCAAACGATTT
CGAAGAAAGTGCTCGTCGCTTTGATTAAGCAAAAATGTCTTTGATTCCAT
CTATATTCGGAAACAGGAGCGTGCTCGACCCATTTTCCTCGGACGTTTGG
GCGCCCCTTGGCTCATCCAGCAATGAGGTGTCAACATTTGCCAGTGCTCA
AGTCGATTGGAAAGAAACCCCGGAAGCTCATGTTTTCAAGGCGGATCTTC
CGGGGCTCAAGAAAGAGGAAGTGAAGGTTGAAGTTAAGGACGGGAGAGTC
CTTCAGATCAGCGGTGAGAGAAGCGTCGAGAAGGAAGACAAAAACGACAA
ATGGCGCCGTGTTGAGAGGGGCCGCGGCAAGTTCCTGAGGAGGTTCCGGT
TGCCTGAGAATGCCAAGATCGATCAAGTTAAGGCATCAATGGAGAATGGT
GTCCTCACCGTCACTG
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