CX306418

Overview
NameCX306418
Unique NameCX306418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: FLS1_ARATH (Flavonol synthase/flavanone 3-hydroxylase OS=Arabidopsis thaliana GN=FLS1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.128e-14
Identity = 39/118 (33.05%), Postives = 66/118 (55.93%), Query Frame = -1
Query:  162 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTK 515
            G+ +HTD   +T+L+ ++  GLQ+   + W D + +P A++++IGD +  +SN  Y +V HR   +   + R+S  VF  P  R+ + GP PEL   + P +F+   + DY  R   K
Sbjct:  217 GVPAHTDLSGITLLVPNEVPGLQVFKDDHWFDAEYIPSAVIVHIGDQILRLSNGRYKNVLHRTTVDKE-KTRMSWPVFLEP-PREKIVGPLPELTGDDNPPKFKPFAFKDYSYRKLNK 332          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G3OX2_ARATH (Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA4H PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.474e-14
Identity = 42/113 (37.17%), Postives = 66/113 (58.41%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIKHGEE-WVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD   +TIL Q++  GLQ+   +  WV   PVPG+LV+N+GD+L I++N  + SV HR   N  +  R S+A  + P   D +  P P+L+ P +   +  LT+  Y+
Sbjct:  221 GLAAHTDSTLMTILYQNNTAGLQVFRDDVGWVTAPPVPGSLVVNVGDLLHILTNGIFPSVLHRARVN-HVRSRFSMAYLWGPPS-DIMISPLPKLVDPLQSPLYPSLTWKQYL 331          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 45/132 (34.09%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  123 GITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYRL 515
            G   HTDP  ++IL  ++  G QI   +  W+ V P   +  IN+GD LQ+M+N  + SV HRVLAN  ++PR+S+  F  P   + +  P P L+   K + +++ T+ +Y +  +  +L    L NY R+
Sbjct:  196 GFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLAN-GIDPRLSMIYFCGPPLSEKI-APLPSLMK-GKESLYKEFTWFEYKSSTYGSRLADNRLGNYERI 324          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: FLS_SOLTU (Flavonol synthase/flavanone 3-hydroxylase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.925e-14
Identity = 41/112 (36.61%), Postives = 65/112 (58.04%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD   +T+L+ ++   +Q+     W DV  +P A++++IGD ++I+SN +Y SV HR   N   + R+S  VF  PS    + GP P LI+   P +F+   Y DYV
Sbjct:  234 GVVAHTDMSYITLLVPNE---VQVFKDGHWYDVNYIPNAIIVHIGDQVEILSNGKYKSVYHRTTVN-KYKTRMSWPVFLEPSSEHEV-GPIPNLINEANPPKFKTKKYKDYV 340          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 3.283e-14
Identity = 39/81 (48.15%), Postives = 55/81 (67.90%), Query Frame = -1
Query:  273 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNP 515
            G+  HTD   LTIL QD  GGL++++  +W+ VKP   AL +NIGD+ Q +SN  Y SV HRV++ +++E R+SIA F  P
Sbjct:  212 GLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIE-RMSIAFFVCP 291          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G   H D   +T+LL     GL++ +  +W+ V P P A V+N G  L++++N    S+EHR + NS+L  R S+A F  P++ + L GP  E +S E P  +R   + D++
Sbjct:  205 GQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSAL-ARTSVATFIMPTQ-ECLIGPAKEFLSKENPPCYRTTMFRDFM 314          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GAOX1_ORYSJ (Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. japonica GN=20ox1 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.288e-14
Identity = 44/108 (40.74%), Postives = 59/108 (54.63%), Query Frame = -1
Query:  192 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY 515
            G   H DP  LTIL QD  GGL++     W  ++P PGALV+N+GD    +SN  Y S  HR + NS+  PR S+A F  P E D++  P  EL+    P  +   T+
Sbjct:  230 GTGPHCDPTSLTILHQDHVGGLEVWAEGRWRAIRPRPGALVVNVGDTFMALSNARYRSCLHRAVVNST-APRRSLAFFLCP-EMDTVVRPPEELVDDHHPRVYPDFTW 335          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G3O23_WHEAT (Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aestivum GN=GA3ox2-3 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R +T+ +Y+
Sbjct:  225 GLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRESD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R +T+ +Y+
Sbjct:  225 GLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.314e-14
Identity = 44/114 (38.60%), Postives = 68/114 (59.65%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQI-KHG-EEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD G  T +LQ    GLQ+ +HG + WV V  VPGA+V+N+GD+ QI++N  + SV HR + N   + RIS+  F  P     +  P  E ++   PA +R +T+ +Y+
Sbjct:  225 GLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSD-RISLGYFLGPPAHVKV-APLREALA-GTPAAYRAVTWPEYM 335          
The following BLAST results are available for this feature:
BLAST of CX306418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
FLS1_ARATH1.128e-1433.05Flavonol synthase/flavanone 3-hydroxylase OS=Arabi... [more]
G3OX2_ARATH1.474e-1437.17Gibberellin 3-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G2OX1_PEA1.925e-1434.09Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
FLS_SOLTU1.925e-1436.61Flavonol synthase/flavanone 3-hydroxylase OS=Solan... [more]
G2OX7_ARATH3.283e-1448.15Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
IDS3_HORVU4.288e-1434.822'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
GAOX1_ORYSJ4.288e-1440.74Gibberellin 20 oxidase 1 OS=Oryza sativa subsp. ja... [more]
G3O23_WHEAT7.314e-1438.60Gibberellin 3-beta-dioxygenase 2-3 OS=Triticum aes... [more]
G3O22_WHEAT7.314e-1438.60Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT7.314e-1438.60Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]

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Properties
Property NameValue
Genbank descriptionC18017H01Rv Drought1 Citrus clementina cDNA clone C18017H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306418 ID=CX306418; Name=CX306418; organism=Citrus clementina; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTCAATGAGACGAACAAT
TGAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAG
ATTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTT
CCATCTAACTGTTTTGTGAAGAACCTTGTTACATAGTCTGTGTATGTGAG
CTGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTC
CATAAAGACTGTCCCTCTCGCTTGGATTGAAGAAAACAGCAATTGAGATT
CGTGGTTCCAGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTA
TTCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAG
CTCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGC
AGCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGT
ATGAGATGTGATCCC
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