CX306418

Overview
NameCX306418
Unique NameCX306418
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length515
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: ACCO1_BRAJU (1-aminocyclopropane-1-carboxylate oxidase OS=Brassica juncea GN=ACO PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.630e-13
Identity = 42/113 (37.17%), Postives = 65/113 (57.52%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDK-GGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+ +HTD G + +L QDDK  GLQ+    +W+DV P+  ++VIN+GD L++++N  Y S+ HRV+       R+SIA F+NP   D+   P   L    K   +    + DY+
Sbjct:  176 GLRAHTDAGGIILLFQDDKVTGLQLLKDGDWIDVPPLNHSIVINLGDQLEVITNGRYKSMMHRVVTQKE-GNRMSIASFYNPGS-DAEISPASSLAC--KETEYPSFVFDDYM 284          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GAO1B_WHEAT (Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN=GA20ox1B PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = -1
Query:  141 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 515
            G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  220 GTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSKV-PRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GAO1A_WHEAT (Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN=GA20ox1A PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 6.191e-13
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = -1
Query:  141 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 515
            G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  220 GTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRV-PRKSLAFFLCP-EMDKVVAPPGTLVDASNPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GAOX1_ARATH (Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana GN=20ox1 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 43/112 (38.39%), Postives = 60/112 (53.57%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G   H DP  LTIL QD   GLQ+    +W  ++P P A V+NIGD    +SND Y S  HR + NS  E R S+A F  P ++D +  P  EL+      R+   T++ ++
Sbjct:  243 GTGPHCDPTSLTILHQDHVNGLQVFVENQWRSIRPNPKAFVVNIGDTFMALSNDRYKSCLHRAVVNSESE-RKSLAFFLCP-KKDRVVTPPRELLDSITSRRYPDFTWSMFL 352          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: GAO1D_WHEAT (Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN=GA20ox1D PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 8.086e-13
Identity = 47/128 (36.72%), Postives = 64/128 (50.00%), Query Frame = -1
Query:  141 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTY---TDYVTRFFTKQLDGKTL 515
            G   H DP  LTIL QD+ GGLQ+     W  ++P   A V+NIGD    +SN  Y S  HR + NS + PR S+A F  P E D +  P   L+    P  +   T+    D+  + +  + D KTL
Sbjct:  220 GTGPHCDPTSLTILHQDNVGGLQVHTEGRWRSIRPRADAFVVNIGDTFMALSNGRYKSCLHRAVVNSRV-PRKSLAFFLCP-EMDKVVAPPGTLVDAANPRAYPDFTWRSLLDFTQKHY--RADMKTL 343          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G2OX1_ARATH (Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis thaliana GN=GA2OX1 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 1.801e-12
Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = -1
Query:  126 GITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYR 515
            G   HTDP  +++L  ++  GLQI   +  W+ V P   +   N+GD LQ+M+N  + SV HRVLAN   + R+S+  F  PS    +  P   LI  E    + + T+++Y    +  +L    L  + R
Sbjct:  193 GFGEHTDPQIISVLRSNNTSGLQINLNDGSWISVPPDHTSFFFNVGDSLQVMTNGRFKSVRHRVLANCK-KSRVSMIYFAGPSLTQRI-APLTCLIDNEDERLYEEFTWSEYKNSTYNSRLSDNRLQQFER 321          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G2OX_PHACN (Gibberellin 2-beta-dioxygenase OS=Phaseolus coccineus GN=GA2OX1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.353e-12
Identity = 40/131 (30.53%), Postives = 73/131 (55.73%), Query Frame = -1
Query:  126 GITSHTDPGPLTILLQDDKGGLQIKHGE-EWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQLDGKTLVNYYR 515
            G   HTDP  +++L  +   GLQI   +  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA+++ + R+S+  F  P+  +++  P P ++   +   +++ T+ +Y    +T +L    L  + +
Sbjct:  200 GFGEHTDPQIISVLRSNSTSGLQICLTDGTWVSVPPDQTSFFINVGDALQVMTNGRFKSVKHRVLADTT-KSRLSMIYFGGPALSENI-APLPSVMLKGEECLYKEFTWCEYKKAAYTSRLADNRLAPFQK 328          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: LDOX_VITVI (Leucoanthocyanidin dioxygenase OS=Vitis vinifera PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 5.241e-12
Identity = 43/124 (34.68%), Postives = 63/124 (50.81%), Query Frame = -1
Query:  198 GITSHTDPGPLTILLQDDKGGLQIKHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNP------------------SERDSLYGPFPELISPEKPARFRQL 515
            G+ +HTD   LT +L +   GLQ+ +  +WV  K VP +++++IGD ++I+SN +Y S+ HR L N   + RIS AVF  P                  S   S   PFP + S     R R+L
Sbjct:  234 GVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPNSIIMHIGDTIEILSNGKYKSILHRGLVNKE-KVRISWAVFCEPPKEKIILKAHCQRRCLRLSHHSSHLAPFPNIFSTSSSGRPRRL 356          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G2OX2_ARATH (Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.525e-11
Identity = 42/122 (34.43%), Postives = 67/122 (54.92%), Query Frame = -1
Query:  156 GITSHTDPGPLTILLQDDKGGLQI--KHGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYVTRFFTKQL 515
            G   HTDP  +++L  ++  GLQI  K G  WV V P   +  IN+GD LQ+M+N  + SV+HRVLA++    RIS+  F  P     +  P P L+  +    +++ T++ Y +  +  +L
Sbjct:  203 GFGEHTDPQIISVLRSNNTAGLQICVKDGS-WVAVPPDHSSFFINVGDALQVMTNGRFKSVKHRVLADTR-RSRISMIYFGGPPLSQKI-APLPCLVPEQDDWLYKEFTWSQYKSSAYKSKL 321          
BLAST of CX306418 vs. ExPASy Swiss-Prot
Match: G3OX3_ARATH (Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=At4g21690 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.885e-11
Identity = 39/116 (33.62%), Postives = 63/116 (54.31%), Query Frame = -1
Query:  180 GITSHTDPGPLTILLQDDKGGLQIK----HGEEWVDVKPVPGALVINIGDILQIMSNDEYISVEHRVLANSSLEPRISIAVFFNPSERDSLYGPFPELISPEKPARFRQLTYTDYV 515
            G+  HTD   LTIL Q +  GL+I+     G  W+ V+P+ G+LV+ +GD+  I+SN ++ S  HR + N +   R+S A F  P +   + GP         P  +R+L + +Y+
Sbjct:  222 GLAPHTDSSLLTILYQGNIPGLEIESPQEEGSRWIGVEPIEGSLVVIMGDLSHIISNGQFRSTMHRAVVNKT-HHRVSAAYFAGPPKNLQI-GPLTS--DKNHPPIYRRLIWEEYL 333          
The following BLAST results are available for this feature:
BLAST of CX306418 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 81
Match NameE-valueIdentityDescription
ACCO1_BRAJU3.630e-1337.171-aminocyclopropane-1-carboxylate oxidase OS=Brass... [more]
GAO1B_WHEAT6.191e-1336.72Gibberellin 20 oxidase 1-B OS=Triticum aestivum GN... [more]
GAO1A_WHEAT6.191e-1336.72Gibberellin 20 oxidase 1-A OS=Triticum aestivum GN... [more]
GAOX1_ARATH8.086e-1338.39Gibberellin 20 oxidase 1 OS=Arabidopsis thaliana G... [more]
GAO1D_WHEAT8.086e-1336.72Gibberellin 20 oxidase 1-D OS=Triticum aestivum GN... [more]
G2OX1_ARATH1.801e-1232.06Gibberellin 2-beta-dioxygenase 1 OS=Arabidopsis th... [more]
G2OX_PHACN2.353e-1230.53Gibberellin 2-beta-dioxygenase OS=Phaseolus coccin... [more]
LDOX_VITVI5.241e-1234.68Leucoanthocyanidin dioxygenase OS=Vitis vinifera P... [more]
G2OX2_ARATH1.525e-1134.43Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis th... [more]
G3OX3_ARATH9.885e-1133.62Gibberellin 3-beta-dioxygenase 3 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC18017H01Rv Drought1 Citrus clementina cDNA clone C18017H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306418 ID=CX306418; Name=CX306418; organism=Citrus clementina; type=EST; length=515bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTCAATGAGACGAACAAT
TGAATTGTTATTCTTACGTAAGAATAGTTTATACAGGCACAAACAACCAG
ATTTACCAAGTTTTGTTTCTTACAGCCTATAGTAATTCACCAATGTTTTT
CCATCTAACTGTTTTGTGAAGAACCTTGTTACATAGTCTGTGTATGTGAG
CTGCCGAAAACGAGCTGGCTTCTCTGGGGATATCAGCTCCGGGAATGGTC
CATAAAGACTGTCCCTCTCGCTTGGATTGAAGAAAACAGCAATTGAGATT
CGTGGTTCCAGGGACGAATTAGCCAATACTCTATGCTCTACACTTATGTA
TTCATCATTGGACATAATCTGAAGTATATCCCCAATGTTAATAACCAGAG
CTCCTGGAACTGGTTTAACATCCACCCATTCCTCACCATGCTTAATTTGC
AGCCCACCTTTATCATCTTGCAACAAGATTGTCAATGGCCCTGGATCAGT
ATGAGATGTGATCCC
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