CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATM (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=hemF PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 3.317e-45
Identity = 82/157 (52.23%), Postives = 103/157 (65.61%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F  DA  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIADADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YEAST (Coproporphyrinogen-III oxidase OS=Saccharomyces cerevisiae GN=HEM13 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 4.332e-45
Identity = 77/159 (48.43%), Postives = 104/159 (65.41%), Query Frame = 3
Query:   81 IPFFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            + FFA G+S V+HP NP APT H NYRYFET    +  G P+ WWFGGG DLTP+Y++EED + FH   K A DK D   YPRFKKWCD+YFYI H          FFDD ++ D + +L    +C ++ + +Y+ I+++RKD P+T + + WQ +RRG
Sbjct:  109 VKFFACGLSMVIHPVNPHAPTTHLNYRYFET---WNQDGTPQTWWFGGGADLTPSYLYEEDGQLFHQLHKDALDKHDTALYPRFKKWCDEYFYITHRKETRGIGGIFFDDYDERDPQEILKMVEDCFDAFLPSYLTIVKRRKDMPYTKEEQQWQAIRRG 264          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATW (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. tularensis (strain WY96-3418) GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATT (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. tularensis GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATO (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. holarctica (strain OSU18) GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRNEYRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATH (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. holarctica (strain LVS) GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDEYRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATF (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDEYRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRAT1 (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=hemF PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.150e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D T+YP+FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYPKFKKWCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRATN (Coproporphyrinogen-III oxidase, aerobic OS=Francisella tularensis subsp. novicida (strain U112) GN=hemF PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 4.790e-44
Identity = 81/157 (51.59%), Postives = 102/157 (64.97%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  DTP     WWFGGG DLTP Y FEED  H+H T K+  DK D T+Y +FKKWCD+YFY+KH          FFDDLND   +   +F T+CANS + AYIPI+ +RK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGLSLVIHPRNPFVPTSHANFRIFIAGADTDTP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDKTYYSKFKKWCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFNFVTDCANSYLDAYIPIVAQRKNIEYSQKHKDFQLYRRG 246          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_FRAP2 (Coproporphyrinogen-III oxidase, aerobic OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=hemF PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 2.377e-43
Identity = 81/157 (51.59%), Postives = 100/157 (63.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP+NPF PT H N+R F   A  D P     WWFGGG DLTP Y FEED  H+H T K+  DK D ++YP FKK CD+YFY+KH          FFDDLND   +    F T+CANS + AYIPI+EKRK+  ++ +HK +Q  RRG
Sbjct:   94 FIATGVSLVIHPRNPFVPTSHANFRIFVAGADTDNP----IWWFGGGFDLTPYYPFEEDAIHWHQTAKNICDKHDASYYPSFKKLCDEYFYLKHRDECRGVGGLFFDDLNDKSFDECFKFVTDCANSYLDAYIPIVEKRKNIEYSQKHKDFQLYRRG 246          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_FRATM3.317e-4552.23Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_YEAST4.332e-4548.43Coproporphyrinogen-III oxidase OS=Saccharomyces ce... [more]
HEM6_FRATW2.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRATT2.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRATO2.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRATH2.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRATF2.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRAT12.150e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRATN4.790e-4451.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]
HEM6_FRAP22.377e-4351.59Coproporphyrinogen-III oxidase, aerobic OS=Francis... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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