CX306419

Overview
NameCX306419
Unique NameCX306419
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
Drought1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPS (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pseudotuberculosis GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPP (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pestis (strain Pestoides F) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPN (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPG (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pestis bv. Antiqua (strain Angola) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPE (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pestis GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPB (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERPA (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_YERP3 (Coproporphyrinogen-III oxidase, aerobic OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 70/157 (44.59%), Postives = 87/157 (55.41%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    G    WWFGGG DLTP Y FEED  H+H    S    F    YPR+KKWCDDYFYIKH          FFDDLN  D     +F     +  + AY+PI+ +RK   + D+ + +Q  RRG
Sbjct:   88 FQALGVSLVIHPLNPYLPTSHANVRFFIAEKP----GEDAVWWFGGGFDLTPYYGFEEDAIHWHQVAHSLCQPFGEQIYPRYKKWCDDYFYIKHRQEARGIGGLFFDDLNSPDFMTCFNFTQAVGDGFLAAYMPIVARRKALGWGDRERQFQLYRRG 240          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_PSEPF (Coproporphyrinogen-III oxidase, aerobic OS=Pseudomonas fluorescens (strain Pf0-1) GN=hemF PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.634e-34
Identity = 68/157 (43.31%), Postives = 92/157 (58.60%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP  PT H N R+F  +   + P     WWFGGG DLTP Y  EED  H+H   + A   F P  YPR+K WCD YF+IKH          FFDDLN++D +   +F     ++ I AY+PI+++RK+  FT + + +Q+ RRG
Sbjct:   87 FEALGVSLVIHPHNPHVPTSHANVRFFIAEKEGEEP----VWWFGGGFDLTPYYGNEEDCIHWHRVAEKACAPFGPDVYPRYKAWCDTYFHIKHRHEPRGIGGLFFDDLNEWDFDTSFAFMRAIGDAYIDAYLPIVQRRKNDAFTARQREFQEFRRG 239          
BLAST of CX306419 vs. ExPASy Swiss-Prot
Match: HEM6_ECOLI (Coproporphyrinogen-III oxidase, aerobic OS=Escherichia coli (strain K12) GN=hemF PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.441e-34
Identity = 69/157 (43.95%), Postives = 89/157 (56.69%), Query Frame = 3
Query:   87 FFAAGISSVLHPKNPFAPTLHFNYRYFETDAPKDTPGAPRQWWFGGGTDLTPAYIFEEDVKHFHSTQKSARDKFDPTFYPRFKKWCDDYFYIKHXXXXXXXXXXFFDDLNDYDQEMLLSFATECANSVIRAYIPIIEKRKDTPFTDQHKAWQQLRRG 557
            F A G+S V+HP NP+ PT H N R+F  + P    GA   WWFGGG DLTP Y FEED  H+H T +     F    YPR+KKWCD+YFY+KH          FFDDLN  D +   +F          AY+PI+E+RK   + ++ + +Q  RRG
Sbjct:   86 FEAMGVSLVVHPHNPYVPTSHANVRFFIAEKP----GADPVWWFGGGFDLTPFYGFEEDAIHWHRTARDLCLPFGEDVYPRYKKWCDEYFYLKHRNEQRGIGGLFFDDLNTPDFDRCFAFMQAVGKGYTDAYLPIVERRKAMAYGERERNFQLYRRG 238          
The following BLAST results are available for this feature:
BLAST of CX306419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 239
Match NameE-valueIdentityDescription
HEM6_YERPS2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPP2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPN2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPG2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPE2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPB2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERPA2.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_YERP32.634e-3444.59Coproporphyrinogen-III oxidase, aerobic OS=Yersini... [more]
HEM6_PSEPF2.634e-3443.31Coproporphyrinogen-III oxidase, aerobic OS=Pseudom... [more]
HEM6_ECOLI3.441e-3443.95Coproporphyrinogen-III oxidase, aerobic OS=Escheri... [more]

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Properties
Property NameValue
Genbank descriptionC18017H02Rv Drought1 Citrus clementina cDNA clone C18017H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX306419 ID=CX306419; Name=CX306419; organism=Citrus clementina; type=EST; length=558bp
GCGGGGTTGTTTATGGGGTCATGCCTCCTGAAGCTTATAGAGCTGCCAAA
GCTGCTGCTTCTGATGAGAAGCCCGGTCCCATTCCCTTTTTCGCTGCCGG
TATCAGCTCGGTTTTACACCCGAAGAACCCTTTTGCACCGACCTTGCATT
TTAATTATCGGTATTTTGAGACAGATGCACCAAAAGATACTCCTGGAGCA
CCTCGACAATGGTGGTTTGGCGGTGGAACAGATTTAACTCCTGCATATAT
CTTTGAAGAGGATGTTAAGCACTTCCATTCTACTCAAAAAAGTGCCCGCG
ACAAATTTGATCCTACCTTTTATCCTCGATTCAAGAAATGGTGTGATGAC
TATTTCTATATCAAGCATCGTGGTGAAAGACGAGGGCTTGGAGGACTATT
TTTTGATGATCTGAATGATTATGATCAGGAGATGCTTCTTTCTTTTGCTA
CTGAATGTGCAAATTCGGTGATTCGTGCTTACATACCCATTATAGAGAAG
AGAAAGGATACACCATTTACCGATCAGCATAAGGCATGGCAACAGTTGCG
CAGGGGAC
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